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Added taxonomy_distance() for calculating pairwise
taxonomic distances between OTUs from a taxonomy table.
Added support for filtering taxonomy assignments by confidence
scores through a new confidence argument in
taxonomy_tree() and
taxonomy_distance().
Extended vs_cluster_unoise() and
vs_cluster_size() with new arguments for controlling output
from clustering output: clusters and uc. The
uc argument was also added to
vs_usearch_global().
Added a verbose argument to functions that print progress messages or other information to the console.
Updated vs_optimize_truncee_rate() and
vs_optimize_truncqual() with an option to randomly sample
10,000 sequences when the input contains more than 10,000 sequences,
thereby reducing computation time.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.