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A fast implementation of the greedy algorithm for the set cover problem using ‘Rcpp’.
You can install RcppGreedySetCover from github with:
# install.packages("devtools")
::install_github("matthiaskaeding/RcppGreedySetCover") devtools
This is a basic example which shows you how to use the main function:
# Create some data.
set.seed(333)
<- data.table::rbindlist(
X lapply(
seq_len(1e4L),
function(x) list(element=sample.int(n=1e3L,size=sample.int(50L,1L)))
),idcol="set"
)
# Input is in long format.
head(X)
#> set element
#> 1: 1 85
#> 2: 1 973
#> 3: 1 571
#> 4: 1 21
#> 5: 1 721
#> 6: 1 607
# Run set cover
<- RcppGreedySetCover::greedySetCover(X,FALSE)
res #> 100% covered by 45 sets.
# Result is in long format.
head(res)
#> set element
#> 1 19 25
#> 2 19 65
#> 3 19 68
#> 4 19 86
#> 5 19 90
#> 6 19 105
# Check if all elements are covered.
identical(sort(unique(res$element)),sort(unique(X$element)))
#> [1] TRUE
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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