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REFT: Root Exudate Feature Toolkit

Provides tools for molecule-oriented and reaction-centred analysis of root exudate datasets. It supports structural matching based on 'PubChem', calculation of molecular descriptors, and inference of candidate microbe-associated metabolic reactions using Kyoto Encyclopedia of Genes and Genomes ('KEGG') identifiers and Enzyme Commission ('EC') numbers. For background on these databases, see Kanehisa et al. (2023) <doi:10.1093/nar/gkac963> and Kim et al. (2023) <doi:10.1093/nar/gkac956>.

Version: 0.1.4
Depends: R (≥ 4.1.0)
Imports: readxl, dplyr, purrr, stringr, tibble, writexl, webchem, rlang
Suggests: rcdk, rcdklibs
Published: 2026-05-19
DOI: 10.32614/CRAN.package.REFT (may not be active yet)
Author: Guozhen Gao [aut, cre]
Maintainer: Guozhen Gao <gaoguozhen889 at gmail.com>
BugReports: https://github.com/gaoguozhen1/REFT/issues
License: MIT + file LICENSE
URL: https://github.com/gaoguozhen1/REFT
NeedsCompilation: no
Materials: README
CRAN checks: REFT results

Documentation:

Reference manual: REFT.html , REFT.pdf

Downloads:

Package source: REFT_0.1.4.tar.gz
Windows binaries: r-devel: not available, r-release: REFT_0.1.4.zip, r-oldrel: REFT_0.1.4.zip
macOS binaries: r-release (arm64): REFT_0.1.4.tgz, r-oldrel (arm64): REFT_0.1.4.tgz, r-release (x86_64): REFT_0.1.4.tgz, r-oldrel (x86_64): REFT_0.1.4.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=REFT to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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