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Now importing throw() from R.oo
instead of R.methodsS3, because the latter is
deprecated and will soon be removed.
Coerced NEWS file to NEWS.md.
Update outdated or broken URLs in the documentation.
finalize() is called on any deleted
AbstractFileArray objects.R.huge Package object is also
available when the package is only loaded (but not attached).Package no longer utilizes import(), only
importFrom():s.
Removed fallback attachments of R.utils as these are no longer needed with R.oo (>= 1.15.1).
Cleaned out unnecessary appendVarArgs().
Added another package system test.
For now, package attaches the R.oo package. This
is needed due to what appears to be a bug in how R.oo
finalizes Object:s assuming R.oo is/can be
attached. Until that is resolved, we make sure R.oo is
attached.
startupMessage() of
R.oo.rm() calls with
NULL assignments.\usage{} lines are at most 90
characters long.... to NextMethod(),
cf. R-devel thread ‘Do not pass’…’ to NextMethod()
- it’ll do it for you; missing documentation, a bug or just me?’ on Oct
16, 2012.Updated package requirements.
Package no longer call .Internal() functions. This
will cause a slowdown, because we now have to deal with overhead in
functions such as seek(), readBin() and
writeBin().
Package no longer creates new generic functions for
as.vector() and as.matrix() such that
R CMD check no longer complaints.
cat().nchars (not nchar) when
calling readChar().[() for FileMatrix explicitly
specifies origin="current" in the call to
readBinFragment(), which is an argument added in
R.utils 1.5.7.writeValues() of
AbstractFileArray would give “Error: 4 arguments passed to
.Internal(writeBin) which requires 5”. Updated so it works
with all versions of R.Now open() of AbstractFileArray first
tries to open the file for reading and updating (as before). If that
fails, then it tries to open the file for reading only. It might be that
the file is only used for reading, so if the permission allows for that
but not updating, then open it.
EXCEPTION HANDLING: Methods that creates/modifies files will give a clear error message if the file permissions does not allow it.
Moved internal readBinFragments() and
writeBinFragments() to R.utils.
No bug fixes was made in this version.
packageStartupMessage() so that it can be suppressed.Argument dimOrder of the
AbstractFileArray constructor was not recognized causing
weird results if it was intended to be in a non-increasing order,
e.g. FileMatrix(..., byrow=TRUE).
Reading/writing data from and to a FileMatrix via
[() / [<-() was broken. Thanks Jens
Oehlschlägel for troubleshooting and reporting this.
Added private readBinFragments() and
writeBinFragments().
Added tests/ scripts.
Committed to CRAN.
Package passed R CMD check on R v2.5.0 and R v2.6.0
devel.
Package passed R CMD check on R v2.5.0.
Added more Rdoc comments.
Added getComments() and setComments()
to AbstractFileArray.
Added a default buffer of free bytes after the header comments. This will make it easier to update the comments. Had to change the file format.
FileVector and abstract superclass
AbstractFileArray. The FileVector class is now
used by the APS methods in the affxparser.extras
package.These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.