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QuICSeedR: Analyze Data for Fluorophore-Assisted Seed Amplification Assays
A toolkit for analysis and visualization of data from fluorophore-assisted seed amplification assays, such as Real-Time Quaking-Induced Conversion (RT-QuIC) and Fluorophore-Assisted Protein Misfolding Cyclic Amplification (PMCA). 'QuICSeedR' addresses limitations in existing software by automating data processing, supporting large-scale analysis, and enabling comparative studies of analysis methods. It incorporates methods described in Henderson et al. (2015) <doi:10.1099/vir.0.069906-0>, Li et al. (2020) <doi:10.1038/s41598-021-96127-8>, Rowden et al. (2023) <doi:10.3390/pathogens12020309>, Haley et al. (2013) <doi:10.1371/journal.pone.0081488>, and Mair and Wilcox (2020) <doi:10.3758/s13428-019-01246-w>. Please refer to the original publications for details.
| Version: |
0.1.2 |
| Depends: |
R (≥ 4.1.0) |
| Imports: |
WRS2, magrittr, graphics, stats, ggplot2, methods, dplyr, tidyr, tidyselect, rlang, readxl |
| Suggests: |
testthat (≥ 3.0.0) |
| Published: |
2024-09-02 |
| DOI: |
10.32614/CRAN.package.QuICSeedR |
| Author: |
Manci Li  [aut,
cre] |
| Maintainer: |
Manci Li <li000021 at umn.edu> |
| License: |
GPL-3 | file LICENSE |
| Copyright: |
Manci Li |
| NeedsCompilation: |
no |
| Materials: |
README |
| CRAN checks: |
QuICSeedR results |
Documentation:
Downloads:
Linking:
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https://CRAN.R-project.org/package=QuICSeedR
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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