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PathwayVote: Robust Pathway Enrichment for DNA Methylation Studies Using Ensemble Voting

Implements a robust, voting-based pathway enrichment method designed for DNA methylation data analysis. The algorithm allows the input of expression quantitative trait methylation (eQTM) data to aggregates pathway signals across multiple parameter settings, and selects pathways supported across combinations using a vote-pruning strategy.

Version: 0.1.0
Depends: R (≥ 4.0.0)
Imports: dplyr, org.Hs.eg.db, ReactomePA, clusterProfiler, AnnotationDbi, methods, future, furrr, parallelly
Suggests: testthat
Published: 2025-04-16
DOI: 10.32614/CRAN.package.PathwayVote
Author: Yinan Zheng ORCID iD [aut, cre]
Maintainer: Yinan Zheng <y-zheng at northwestern.edu>
License: MIT + file LICENSE
NeedsCompilation: no
CRAN checks: PathwayVote results

Documentation:

Reference manual: PathwayVote.pdf

Downloads:

Package source: PathwayVote_0.1.0.tar.gz
Windows binaries: r-devel: PathwayVote_0.1.0.zip, r-release: PathwayVote_0.1.0.zip, r-oldrel: PathwayVote_0.1.0.zip
macOS binaries: r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): not available, r-oldrel (x86_64): not available

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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