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PAC: Partition-Assisted Clustering and Multiple Alignments of Networks

Implements partition-assisted clustering and multiple alignments of networks. It 1) utilizes partition-assisted clustering to find robust and accurate clusters and 2) discovers coherent relationships of clusters across multiple samples. It is particularly useful for analyzing single-cell data set. Please see Li et al. (2017) <doi:10.1371/journal.pcbi.1005875> for detail method description.

Version: 1.1.4
Imports: Rcpp (≥ 0.12.2), igraph, parmigene, infotheo, dplyr, Rtsne, ggplot2, ggrepel
LinkingTo: Rcpp
Suggests: knitr, rmarkdown
Published: 2021-02-18
DOI: 10.32614/CRAN.package.PAC
Author: Ye Henry Li, Dangna Li
Maintainer: Ye Henry Li <hlowl2 at gmail.com>
License: GPL-3
URL: https://doi.org/10.1371/journal.pcbi.1005875
NeedsCompilation: yes
SystemRequirements: C++11
CRAN checks: PAC results

Documentation:

Reference manual: PAC.pdf
Vignettes: Using the PAC package

Downloads:

Package source: PAC_1.1.4.tar.gz
Windows binaries: r-devel: PAC_1.1.4.zip, r-release: PAC_1.1.4.zip, r-oldrel: PAC_1.1.4.zip
macOS binaries: r-release (arm64): PAC_1.1.4.tgz, r-oldrel (arm64): PAC_1.1.4.tgz, r-release (x86_64): PAC_1.1.4.tgz, r-oldrel (x86_64): PAC_1.1.4.tgz
Old sources: PAC archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=PAC to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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