The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
O-statistics, or overlap statistics, measure the degree of community-level trait overlap. They are estimated by fitting nonparametric kernel density functions to each species’ trait distribution and calculating their areas of overlap. For instance, the median pairwise overlap for a community is calculated by first determining the overlap of each species pair in trait space, and then taking the median overlap of each species pair in a community. This median overlap value is called the O-statistic (O for overlap). The Ostats() function calculates separate univariate overlap statistics for each trait, while the Ostats_multivariate() function calculates a single multivariate overlap statistic for all traits. O-statistics can be evaluated against null models to obtain standardized effect sizes. 'Ostats' is part of the collaborative Macrosystems Biodiversity Project "Local- to continental-scale drivers of biodiversity across the National Ecological Observatory Network (NEON)." For more information on this project, see the Macrosystems Biodiversity Website (<https://neon-biodiversity.github.io/>). Calculation of O-statistics is described in Read et al. (2018) <doi:10.1111/ecog.03641>, and a teaching module for introducing the underlying biological concepts at an undergraduate level is described in Grady et al. (2018) <http://tiee.esa.org/vol/v14/issues/figure_sets/grady/abstract.html>.
| Version: | 0.2.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | sfsmisc, matrixStats, circular, hypervolume, ggplot2, gridExtra, viridis, grid, MASS |
| Suggests: | testthat (≥ 2.1.0), knitr, rmarkdown |
| Published: | 2022-09-12 |
| DOI: | 10.32614/CRAN.package.Ostats |
| Author: | Quentin D. Read [aut, cre], Arya Yue [aut], Isadora E. Fluck [aut], Benjamin Baiser [aut], John M. Grady [aut], Phoebe L. Zarnetske [aut], Sydne Record [aut] |
| Maintainer: | Quentin D. Read <quentin.read at usda.gov> |
| BugReports: | https://github.com/NEON-biodiversity/Ostats/issues |
| License: | MIT + file LICENSE |
| URL: | https://neon-biodiversity.github.io/Ostats/ |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | Ostats results |
| Reference manual: | Ostats.pdf |
| Vignettes: |
Ostats multivariate-Ostats |
| Package source: | Ostats_0.2.0.tar.gz |
| Windows binaries: | r-devel: Ostats_0.2.0.zip, r-release: Ostats_0.2.0.zip, r-oldrel: Ostats_0.2.0.zip |
| macOS binaries: | r-release (arm64): Ostats_0.2.0.tgz, r-oldrel (arm64): Ostats_0.2.0.tgz, r-release (x86_64): Ostats_0.2.0.tgz, r-oldrel (x86_64): Ostats_0.2.0.tgz |
| Old sources: | Ostats archive |
Please use the canonical form https://CRAN.R-project.org/package=Ostats to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.