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OlinkAnalyzeVignettes: Vignettes for Analyzing Data using 'OlinkAnalyze'

Exemplifying analysis of large-scale protein data from the 'Olink platform', primarily relative protein expression data that has been exported from 'Olink NPX Software', as well as QUANT data from 'Olink'. QUANT data is log-transformed. Materials focus on reading data, demonstrating data wrangling and quality control analysis, performing statistical analysis and generating figures to visualize the results of the statistical analysis. The goal of this package is to guide users extract biological insights from large-scale protein data run on the 'Olink platform'. More information on 'Olink' data can be found at <https://olink.com/>.

Version: 1.0.1
Depends: R (≥ 4.1.0)
Suggests: dplyr (≥ 1.2.0), ggplot2, ggpubr, ggrepel, kableExtra, knitr, OlinkAnalyze, stringr, tidyr
Published: 2026-06-08
DOI: 10.32614/CRAN.package.OlinkAnalyzeVignettes
Author: Kathleen Nevola ORCID iD [aut, cre] (kathy-nevola), Marianne Sandin ORCID iD [aut] (marisand), Jamey Guess ORCID iD [aut] (jrguess), Simon Forsberg ORCID iD [aut] (simfor), Christoffer Cambronero [aut] (Orbmac), Pascal Pucholt ORCID iD [aut] (AskPascal), Boxi Zhang ORCID iD [aut] (boxizhang), Masoumeh Sheikhi [aut] (MasoumehSheikhi), Klev Diamanti ORCID iD [aut] (klevdiamanti), Amrita Kar [aut] (amrita-kar), Lei Conze [aut] (leiliuC), Kristyn Chin [aut] (kristynchin-olink), Danai Topouza ORCID iD [aut] (dtopouza), Stephen Pollo ORCID iD [aut] (spollo-olprot), Kang Dong ORCID iD [aut] (KangD-dev), Kristian Hodén ORCID iD [ctb] (kristianHoden), Per Eriksson ORCID iD [ctb] (b_watcher), Nicola Moloney ORCID iD [ctb], Britta Lötstedt ORCID iD [ctb], Emmett Sprecher ORCID iD [ctb], Jessica Barbagallo [ctb] (jbarbagallo), Olof Mansson [ctr] (olofmansson), Ola Caster [ctb] (OlaCaster), Olink [cph, fnd]
Maintainer: Kathleen Nevola <biostattools at olink.com>
Contact: biostattools@olink.com
License: AGPL (≥ 3)
URL: https://olink.com/ https://github.com/Olink-Proteomics/OlinkRPackage
NeedsCompilation: no
Materials: NEWS
CRAN checks: OlinkAnalyzeVignettes results

Documentation:

Reference manual: OlinkAnalyzeVignettes.html , OlinkAnalyzeVignettes.pdf
Vignettes: Bridging across NGS-based Olink products (source, R code)
Introduction to bridging Olink® NPX datasets (source, R code)
Calculating LOD from Olink® Explore data (source, R code)
Outlier Exclusion Vignette (source, R code)
Plate Randomization Vignette (source, R code)

Downloads:

Package source: OlinkAnalyzeVignettes_1.0.1.tar.gz
Windows binaries: r-devel: OlinkAnalyzeVignettes_1.0.1.zip, r-release: OlinkAnalyzeVignettes_1.0.1.zip, r-oldrel: OlinkAnalyzeVignettes_1.0.1.zip
macOS binaries: r-release (arm64): OlinkAnalyzeVignettes_1.0.1.tgz, r-oldrel (arm64): OlinkAnalyzeVignettes_1.0.1.tgz, r-release (x86_64): OlinkAnalyzeVignettes_1.0.1.tgz, r-oldrel (x86_64): OlinkAnalyzeVignettes_1.0.1.tgz

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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