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L = NULL, Ne_clonal_Y2000(),
Ne_sexual_Y2000(), Ne_mixed_Y2000() and
Ne_sensitivity_L() (reference line) computed L incorrectly.
The term sum(F * T^x) already equals l_x * m_x, but it was
multiplied by l_x a second time, and the cohort was started from the
stable stage distribution instead of from newborns. The returned L was
about one third of the correct value (4.728 instead of 13.399 for
Fritillaria camtschatcensis Miz), so Ne/N was overestimated and
minimum census size underestimated.recruit_row, and reproduces Table 4 of Yonezawa et
al. (2000) exactly (13.399 Miz, 8.353 Nan). Results obtained by
supplying L directly are unchanged.Ne_sensitivity_L() now calls the same internal function
rather than a separate copy of the calculation.tests/testthat/test-generation-time.R; the
Yonezawa vignette replication check now compares the computed L with
Table 4.Ne_compadre_sexual_filter() and
Ne_compadre_sexual() — moved to the dedicated research
repository NeStage_COMPADREvignettes/NeStage_COMPADRE.Rmd — moved to
NeStage_COMPADREinst/scripts/Ne_compadre_sexual_analysis.R —
moved to NeStage_COMPADRERcompadre from SuggestsLicense field to reference LICENSE fileggplot2 declared in Importsexpm from SuggestsNe_compadre_sexual_filter() and
Ne_compadre_sexual()NeStage_COMPADRE.Rmdsource() blocks in all three existing
vignettesRcompadre to SuggestsNeStage_quickstart.Rmd)Ne_sexual_Y2000(),
Ne_clonal_Y2000(), Ne_mixed_Y2000()These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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