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Requires rooted phylogeny as input and creates a table of genera, their monophyly-status, which taxa cause problems in monophyly etc. Different information can be extracted from the output and a plot function allows visualization of the results in a number of ways. "MonoPhy: a simple R package to find and visualize monophyly issues." Schwery, O. & O'Meara, B.C. (2016) <doi:10.7717/peerj-cs.56>.
| Version: | 1.3.2 |
| Depends: | ape, phytools |
| Imports: | phangorn, RColorBrewer |
| Suggests: | knitr, testthat, paleotree, rmarkdown, taxize |
| Published: | 2024-10-17 |
| DOI: | 10.32614/CRAN.package.MonoPhy |
| Author: | Orlando Schwery [aut, cre], Brian C. O'Meara [aut, ctb], Peter Cowman [ctb] |
| Maintainer: | Orlando Schwery <schwery.macroevo at pm.me> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| Citation: | MonoPhy citation info |
| CRAN checks: | MonoPhy results |
| Reference manual: | MonoPhy.pdf |
| Vignettes: |
MonoPhy Tutorial (source, R code) |
| Package source: | MonoPhy_1.3.2.tar.gz |
| Windows binaries: | r-devel: MonoPhy_1.3.2.zip, r-release: MonoPhy_1.3.2.zip, r-oldrel: MonoPhy_1.3.2.zip |
| macOS binaries: | r-release (arm64): MonoPhy_1.3.2.tgz, r-oldrel (arm64): MonoPhy_1.3.2.tgz, r-release (x86_64): MonoPhy_1.3.2.tgz, r-oldrel (x86_64): MonoPhy_1.3.2.tgz |
| Old sources: | MonoPhy archive |
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