MetaNet: Network Analysis for Omics Data

Comprehensive network analysis package. Calculate correlation network fastly, accelerate lots of analysis by parallel computing. Support for multi-omics data, search sub-nets fluently. Handle bigger data, more than 10,000 nodes in each omics. Offer various layout method for multi-omics network and some interfaces to other software ('Gephi', 'Cytoscape', 'ggplot2'), easy to visualize. Provide comprehensive topology indexes calculation, including ecological network stability.

Version:	0.1.2
Depends:	R (≥ 4.1.0), igraph (≥ 1.3.5)
Imports:	graphics, dplyr, ggplot2 (≥ 3.2.0), ggnewscale, ggrepel, RColorBrewer, grDevices, magrittr, reshape2, stats, tibble, utils, pcutils (≥ 0.2.5), rlang
Suggests:	pheatmap, vegan, stringr, foreach, doSNOW, snow, knitr, rmarkdown, prettydoc, Hmisc, gifski, ggraph, networkD3, ggpmisc, ggtree, treeio, circlize, ggpubr
Published:	2024-03-25
DOI:	10.32614/CRAN.package.MetaNet
Author:	Chen Peng [aut, cre]
Maintainer:	Chen Peng <pengchen2001 at zju.edu.cn>
BugReports:	https://github.com/Asa12138/MetaNet/issues
License:	GPL-3
URL:	https://github.com/Asa12138/MetaNet
NeedsCompilation:	no
Materials:	README NEWS
CRAN checks:	MetaNet results

Documentation:

Reference manual:	MetaNet.pdf
Vignettes:	MetaNet

Downloads:

Package source:	MetaNet_0.1.2.tar.gz
Windows binaries:	r-devel: MetaNet_0.1.2.zip, r-release: MetaNet_0.1.2.zip, r-oldrel: MetaNet_0.1.2.zip
macOS binaries:	r-release (arm64): MetaNet_0.1.2.tgz, r-oldrel (arm64): MetaNet_0.1.2.tgz, r-release (x86_64): MetaNet_0.1.2.tgz, r-oldrel (x86_64): MetaNet_0.1.2.tgz
Old sources:	MetaNet archive

Reverse dependencies:

Reverse suggests:

pctax, ReporterScore

Linking:

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