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A pipeline for the meta-analysis of gene expression data. We have assembled several analysis and plot functions to perform integrated multi-cohort analysis of gene expression data (meta- analysis). Methodology described in: <http://biorxiv.org/content/early/2016/08/25/071514>.
Version: | 2.1.3 |
Depends: | R (≥ 3.6) |
Imports: | BiocManager, rmeta, multtest, ggplot2, parallel, Rmisc, gplots, Biobase, RMySQL, DBI, stringr, preprocessCore, GEOquery, GEOmetadb, RSQLite, data.table, ggpubr, ROCR, zoo, pracma, COCONUT, Metrics, manhattanly, DT, pheatmap, plyr, boot, dplyr, reshape2, rmarkdown, AnnotationDbi, HGNChelper, magrittr, readr, plotly, httpuv |
Suggests: | BiocStyle, knitr, RUnit, BiocGenerics, snplist, magick |
Published: | 2020-02-26 |
DOI: | 10.32614/CRAN.package.MetaIntegrator |
Author: | Winston A. Haynes, Francesco Vallania, Aurelie Tomczak, Timothy Sweeney, Erika Bongen, Aditya M. Rao, Purvesh Khatri |
Maintainer: | Aditya M. Rao <adityamr at stanford.edu> |
License: | LGPL-2 | LGPL-2.1 | LGPL-3 [expanded from: LGPL] |
URL: | http://biorxiv.org/content/early/2016/08/25/071514 |
NeedsCompilation: | no |
Citation: | MetaIntegrator citation info |
Materials: | README NEWS |
In views: | MetaAnalysis, Omics |
CRAN checks: | MetaIntegrator results |
Reference manual: | MetaIntegrator.pdf |
Vignettes: |
Analysis of gene expression data MetaIntegrator Real Example on GEO Data |
Package source: | MetaIntegrator_2.1.3.tar.gz |
Windows binaries: | r-devel: MetaIntegrator_2.1.3.zip, r-release: MetaIntegrator_2.1.3.zip, r-oldrel: MetaIntegrator_2.1.3.zip |
macOS binaries: | r-release (arm64): MetaIntegrator_2.1.3.tgz, r-oldrel (arm64): MetaIntegrator_2.1.3.tgz, r-release (x86_64): MetaIntegrator_2.1.3.tgz, r-oldrel (x86_64): MetaIntegrator_2.1.3.tgz |
Old sources: | MetaIntegrator archive |
Please use the canonical form https://CRAN.R-project.org/package=MetaIntegrator to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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