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– Replaced with _PACKAGE as required by CRAN. – Corrected error-prone uses of class() == 'numeric' with inherits(). – Removed broken link from vignette.
– Adjusted vignette to use TxDb.Hsapiens.UCSC.hg19.knownGene and org.Hs.eg.db conditionally.
– Fixed bare returns without parentheses.
– Updated ‘Mega2RVersion’ so that Mega2R will read databases produced by the current version of Mega2.
– Mega2pedgene updated to work with updated version of pedgene.
– Bug fix: The ‘mkfam’ function now correctly extracts the case/control trait when the database contains more than one phenotype. It worked correctly previously in our simple example data set where there was only one phenotype in the Mega2 database.
– Mega2pedgene adjusted to allow specification of the trait name.
– Improvements to use compressed data created by Mega2 version 5.0.0 or higher.
– Removed strict dependency on GenABEL because GenABEL has been archived.
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