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MKomics: Omics Data Analysis

Similarity plots based on correlation and median absolute deviation (MAD); adjusting colors for heatmaps; aggregate technical replicates; calculate pairwise fold-changes and log fold-changes; compute one- and two-way ANOVA; simplified interface to package 'limma' (Ritchie et al. (2015), <doi:10.1093/nar/gkv007> ) for moderated t-test and one-way ANOVA; Hamming and Levenshtein (edit) distance of strings as well as optimal alignment scores for global (Needleman-Wunsch) and local (Smith-Waterman) alignments with constant gap penalties (Merkl and Waack (2009), ISBN:978-3-527-32594-8).

Version: 0.7
Depends: R (≥ 3.5.0)
Imports: stats, utils, graphics, grDevices, RColorBrewer, robustbase, limma, grid, circlize, ComplexHeatmap
Suggests: knitr, rmarkdown
Published: 2021-08-08
DOI: 10.32614/CRAN.package.MKomics
Author: Matthias Kohl ORCID iD [aut, cre]
Maintainer: Matthias Kohl <Matthias.Kohl at stamats.de>
License: LGPL-3
URL: https://www.stamats.de/
NeedsCompilation: no
Citation: MKomics citation info
Materials: NEWS
CRAN checks: MKomics results

Documentation:

Reference manual: MKomics.pdf
Vignettes: MKomics

Downloads:

Package source: MKomics_0.7.tar.gz
Windows binaries: r-devel: MKomics_0.7.zip, r-release: MKomics_0.7.zip, r-oldrel: MKomics_0.7.zip
macOS binaries: r-release (arm64): MKomics_0.7.tgz, r-oldrel (arm64): MKomics_0.7.tgz, r-release (x86_64): MKomics_0.7.tgz, r-oldrel (x86_64): MKomics_0.7.tgz
Old sources: MKomics archive

Reverse dependencies:

Reverse suggests: RFLPtools

Linking:

Please use the canonical form https://CRAN.R-project.org/package=MKomics to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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