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The 'MIDASim' package is a microbiome data simulator for generating realistic microbiome datasets by adapting a user-provided template. It supports the controlled introduction of experimental signals-such as shifts in taxon relative abundances, prevalence, and sample library sizes-to create distinct synthetic populations under diverse simulation scenarios. For more details, see He et al. (2024) <doi:10.1186/s40168-024-01822-z>.
| Version: | 2.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | psych, MASS, pracma, scam, stats |
| Suggests: | vegan, phyloseq, rmarkdown, knitr, roxygen2, testthat |
| Published: | 2025-07-05 |
| DOI: | 10.32614/CRAN.package.MIDASim |
| Author: | Mengyu He [aut, cre] |
| Maintainer: | Mengyu He <mhe44 at emory.edu> |
| BugReports: | https://github.com/mengyu-he/MIDASim/issues |
| License: | GPL-2 |
| URL: | https://github.com/mengyu-he/MIDASim |
| NeedsCompilation: | no |
| CRAN checks: | MIDASim results |
| Reference manual: | MIDASim.pdf |
| Vignettes: |
MIDASim_vignette (source, R code) |
| Package source: | MIDASim_2.0.tar.gz |
| Windows binaries: | r-devel: not available, r-release: not available, r-oldrel: not available |
| macOS binaries: | r-release (arm64): MIDASim_2.0.tgz, r-oldrel (arm64): MIDASim_2.0.tgz, r-release (x86_64): MIDASim_2.0.tgz, r-oldrel (x86_64): MIDASim_2.0.tgz |
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These binaries (installable software) and packages are in development.
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