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essential_agreement function to allow a
more robust, flexible, and explicit approach to dealing with censored
values. Now, essential_agreement (and
compare_mic) have tolerate_censoring and
tolerate_matched_censoring arguments to control how
censored values are handled. The default values should be appropriate
for most situations where the user is comparing an investigational
method to a gold standard method.compare_mic is faster when only one ab is
providedsubset S3 method added for
mic_validationplot.mic_validation now properly matches dilutions on
the lower end of the scaledroplevels.mic_validation method added that allows
unnecessary MIC levels in a validation object to be droppedtidy_patric_meta_data was missing MICs when
laboratory_typing_method was “MIC” (see 81c69f08)pull_patric_genomes now takes an ab
argument to only download strains where the specified antibiotic was
testedAMR v3.0These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.