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Provides automatization for plot generation succeeding common molecular dynamics analyses. This includes straightforward plots, such as RMSD (Root-Mean-Square-Deviation) and RMSF (Root-Mean-Square-Fluctuation) but also more sophisticated ones such as dihedral angle maps, hydrogen bonds, cluster bar plots and DSSP (Definition of Secondary Structure of Proteins) analysis. Currently able to load GROMOS, GROMACS and AMBER formats, respectively.
| Version: | 1.0.1 |
| Depends: | R (≥ 3.0.0), methods, MASS, RColorBrewer, gplots, gtools |
| Suggests: | R.rsp |
| Published: | 2017-07-04 |
| DOI: | 10.32614/CRAN.package.MDplot |
| Author: | Christian Margreitter [aut, cre], Chris Oostenbrink [aut] |
| Maintainer: | Christian Margreitter <christian.margreitter at gmail.com> |
| License: | GPL-3 |
| URL: | https://github.com/MDplot/MDplot |
| NeedsCompilation: | no |
| Citation: | MDplot citation info |
| Materials: | NEWS |
| CRAN checks: | MDplot results |
| Reference manual: | MDplot.pdf |
| Vignettes: |
MDplot (The R Journal publication) |
| Package source: | MDplot_1.0.1.tar.gz |
| Windows binaries: | r-devel: MDplot_1.0.1.zip, r-release: MDplot_1.0.1.zip, r-oldrel: MDplot_1.0.1.zip |
| macOS binaries: | r-release (arm64): MDplot_1.0.1.tgz, r-oldrel (arm64): MDplot_1.0.1.tgz, r-release (x86_64): MDplot_1.0.1.tgz, r-oldrel (x86_64): MDplot_1.0.1.tgz |
| Old sources: | MDplot archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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