MDMAPR: Molecular Detection Mapping and Analysis Platform

Runs a Shiny web application that merges raw 'qPCR' fluorescence data with related metadata to visualize species presence/absence detection patterns and assess data quality. The application calculates threshold values from raw fluorescence data using a method based on the second derivative method, Luu-The et al (2005) <doi:10.2144/05382RR05>, and utilizes the ‘chipPCR’ package by Rödiger, Burdukiewicz, & Schierack (2015) <doi:10.1093/bioinformatics/btv205> to calculate Cq values. The application has the ability to connect to a custom developed MySQL database to populate the applications interface. The application allows users to interact with visualizations such as a dynamic map, amplification curves and standard curves, that allow for zooming and/or filtering. It also enables the generation of customized exportable reports based on filtered mapping data.

Version:	0.2.3
Imports:	RMySQL, shinydashboard, DBI, DT, leaflet, leaflet.extras, shinyjs, ggplot2, dplyr, readxl, plotly, reactable, writexl, xfun, berryFunctions, shinyWidgets, shiny, htmltools, methods, utils, stats, bslib, htmlwidgets
Published:	2021-06-23
Author:	Alka Benawra
Maintainer:	Alka Benawra <alkabenawra at rogers.com>
BugReports:	https://github.com/HannerLab/MDMAPR/issues
License:	GPL-3
URL:	https://github.com/HannerLab/MDMAPR
NeedsCompilation:	no
Materials:	README
CRAN checks:	MDMAPR results

Documentation:

Reference manual:

MDMAPR.pdf

Downloads:

Package source:	MDMAPR_0.2.3.tar.gz
Windows binaries:	r-devel: MDMAPR_0.2.3.zip, r-release: MDMAPR_0.2.3.zip, r-oldrel: MDMAPR_0.2.3.zip
macOS binaries:	r-release (arm64): MDMAPR_0.2.3.tgz, r-oldrel (arm64): MDMAPR_0.2.3.tgz, r-release (x86_64): MDMAPR_0.2.3.tgz, r-oldrel (x86_64): MDMAPR_0.2.3.tgz
Old sources:	MDMAPR archive

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