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MDMAPR: Molecular Detection Mapping and Analysis Platform

Runs a Shiny web application that merges raw 'qPCR' fluorescence data with related metadata to visualize species presence/absence detection patterns and assess data quality. The application calculates threshold values from raw fluorescence data using a method based on the second derivative method, Luu-The et al (2005) <doi:10.2144/05382RR05>, and utilizes the ‘chipPCR’ package by Rödiger, Burdukiewicz, & Schierack (2015) <doi:10.1093/bioinformatics/btv205> to calculate Cq values. The application has the ability to connect to a custom developed MySQL database to populate the applications interface. The application allows users to interact with visualizations such as a dynamic map, amplification curves and standard curves, that allow for zooming and/or filtering. It also enables the generation of customized exportable reports based on filtered mapping data.

Version: 0.2.3
Imports: RMySQL, shinydashboard, DBI, DT, leaflet, leaflet.extras, shinyjs, ggplot2, dplyr, readxl, plotly, reactable, writexl, xfun, berryFunctions, shinyWidgets, shiny, htmltools, methods, utils, stats, bslib, htmlwidgets
Published: 2021-06-23
DOI: 10.32614/CRAN.package.MDMAPR
Author: Alka Benawra
Maintainer: Alka Benawra <alkabenawra at rogers.com>
BugReports: https://github.com/HannerLab/MDMAPR/issues
License: GPL-3
URL: https://github.com/HannerLab/MDMAPR
NeedsCompilation: no
Materials: README
CRAN checks: MDMAPR results

Documentation:

Reference manual: MDMAPR.pdf

Downloads:

Package source: MDMAPR_0.2.3.tar.gz
Windows binaries: r-devel: MDMAPR_0.2.3.zip, r-release: MDMAPR_0.2.3.zip, r-oldrel: MDMAPR_0.2.3.zip
macOS binaries: r-release (arm64): MDMAPR_0.2.3.tgz, r-oldrel (arm64): MDMAPR_0.2.3.tgz, r-release (x86_64): MDMAPR_0.2.3.tgz, r-oldrel (x86_64): MDMAPR_0.2.3.tgz
Old sources: MDMAPR archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=MDMAPR to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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