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LocaTT: Geographically-Conscious Taxonomic Assignment for Metabarcoding

A bioinformatics pipeline for performing taxonomic assignment of DNA metabarcoding sequence data while considering geographic location. A detailed tutorial is available at <https://urodelan.github.io/Local_Taxa_Tool_Tutorial/>. A manuscript describing these methods is in preparation.

Version: 1.1.2
Imports: utils, stats
Suggests: taxize
Published: 2024-09-05
DOI: 10.32614/CRAN.package.LocaTT
Author: Kenen Goodwin ORCID iD [aut, cre], Taal Levi [aut]
Maintainer: Kenen Goodwin <urodelan at gmail.com>
BugReports: https://github.com/Urodelan/LocaTT/issues
License: GPL (≥ 3)
URL: https://github.com/Urodelan/LocaTT
NeedsCompilation: no
Citation: LocaTT citation info
Materials: README
CRAN checks: LocaTT results

Documentation:

Reference manual: LocaTT.pdf

Downloads:

Package source: LocaTT_1.1.2.tar.gz
Windows binaries: r-devel: LocaTT_1.1.2.zip, r-release: LocaTT_1.1.2.zip, r-oldrel: LocaTT_1.1.2.zip
macOS binaries: r-release (arm64): LocaTT_1.1.2.tgz, r-oldrel (arm64): LocaTT_1.1.2.tgz, r-release (x86_64): LocaTT_1.1.2.tgz, r-oldrel (x86_64): LocaTT_1.1.2.tgz
Old sources: LocaTT archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=LocaTT to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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