The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.

LDlinkR 1.4.0

• Added Zenodo DOI badge in version 1.3.0.9000
• 3/1/2024 - Increased maximum allowed variants in LDmatrix to 2500
• 3/1/2024 - Added bp window size parameter to LDproxy
• 3/4/2024 - Add bp window size parameter to LDproxy_batch

LDlinkR 1.3.0.9000 (development version)

• Add Zenodo DOI badge
• To do: Increase maximum allowed variants in LDmatrix to 3000.

LDlinkR 1.3.0

• Change LDlink Domain URL to https://ldlink.nih.gov/ (previous url root will no longer work following an unspecified amount of time).
• Add Continuous Integration using Github Actions.
• Update citation file with bibentry style

LDlinkR 1.2.3

• Add feature to provide root URL to API
• Fix bug that scrambled columns in LDproxy_batch when ‘append’ option is TRUE
• Update Roxygen version to 7.2.2

LDlinkR 1.2.2

• Issue #19, fix bug in LDtrait error handling of response data.
• Update CRAN downloads badge in README
• Remove link for 1000 Genomes Project in README and vignette

LDlinkR 1.2.1

• Update version number
• Fix bug in LDexpress that returned GRCH37 results when genome build was GRCh38 or GRCh38 High Coverage.
• Fix bug in LDproxy handling of error/warning messages in response data.
• Update RoxygenNote to 7.2.0

LDlinkR 1.2.0

• Submission date: 2022-05-11
• Issue #13 - Add new argument to LDhap (table_type) with four options for different types data output.
• Issue #14 - Fix LDhap valid input check for number of input ‘snps’, line 94.
• Add ‘snps’ to the WORDLIST
• Update test-ldhap with additional tests
• Update vignette with new LDhap usage examples with new argument.
• Make LDhap able to write to file for both types of data returned by the new ‘table_type’ options.
• Add feature ‘genome_build’ to support different genome builds, GRCh37(hg19), GRCh38(hg38), and GRCh38 High Coverage.
• Improve/update error and warning message returned in the response data from the LDlink API server.
• Fix CRAN note about ‘LazyData’ by removing line from Description file.
• Update README file.
• Add testthat tests for feature genome_build
• Add three new Illumina chips to SNPchip
• Add two new Affymetrix chips to SNPchip
• Major update to vignette with new feature genome_build

LDlinkR 1.1.2

• Submission date: 2021-02-19
• Add link to LDlink web site documentation.
• Correct code chunk in vignette FAQ #4, changed option to eval=FALSE; this vignette code chunk no longer requires an internet resource
• added notes to README and vignette that ‘internet access required’ to use
• Add code to check if required internet resources are available per CRAN

LDlinkR 1.1.1

• Release date: 2021-02-02
• Added three new functions, LDtrait, LDexpress & list_gtex_tissues
• Updated vignette with new descriptions of functions and examples.
• Major update to README.md, including basic examples
• Added a NEWS.md file to track changes to the package.
• Issue #2, fixed warning message from write.table in LDproxy_batch when append = TRUE
• Updated most function descriptions on package help page
• Added spell checking for building package

LDlinkR 1.0.2

• Release date 2020-03-02
• Minor updates

LDlinkR 1.0.1

• Release date 2019-10-17
• Minor updates made for publication.

LDlinkR 1.0.0

• Release date 2019-08-01
• Initial release.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.