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KnockoffHybrid: Hybrid Analysis of Population and Trio Data with Knockoff Statistics for FDR Control

Identification of putative causal variants in genome-wide association studies using hybrid analysis of both the trio and population designs. The package implements the method in the paper: Yang, Y., Wang, Q., Wang, C., Buxbaum, J., & Ionita-Laza, I. (2024). KnockoffHybrid: A knockoff framework for hybrid analysis of trio and population designs in genome-wide association studies. The American Journal of Human Genetics, in press.

Version: 1.0.1
Depends: R (≥ 2.10)
Imports: glmnet, SPAtest
Published: 2024-06-11
DOI: 10.32614/CRAN.package.KnockoffHybrid
Author: Yi Yang ORCID iD [aut, cre]
Maintainer: Yi Yang <yi.yang at cityu.edu.hk>
License: GPL-3
NeedsCompilation: no
Materials: README
CRAN checks: KnockoffHybrid results

Documentation:

Reference manual: KnockoffHybrid.pdf

Downloads:

Package source: KnockoffHybrid_1.0.1.tar.gz
Windows binaries: r-devel: KnockoffHybrid_1.0.1.zip, r-release: KnockoffHybrid_1.0.1.zip, r-oldrel: KnockoffHybrid_1.0.1.zip
macOS binaries: r-release (arm64): KnockoffHybrid_1.0.1.tgz, r-oldrel (arm64): KnockoffHybrid_1.0.1.tgz, r-release (x86_64): KnockoffHybrid_1.0.1.tgz, r-oldrel (x86_64): KnockoffHybrid_1.0.1.tgz
Old sources: KnockoffHybrid archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=KnockoffHybrid to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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