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JM4QTN: Joint Mapping for Quantitative Trait Loci

A comprehensive computational framework for joint mapping, developed by Li (2016) <doi:10.11841/j.issn.1007-4333.2016.06.002>, supports quantitative trait locus detection in structured genetic populations. It integrates robust phenotype summarization, computes genotype probabilities, and imputes missing markers for association and linkage mapping. Empirical significance thresholds are estimated via permutation testing coupled with stepwise regression. The framework enables genome-wide scans under both univariate and multivariate trait models, streamlining the discovery of complex genetic architectures.

Version: 1.0.0
Depends: R (≥ 3.5.0)
Imports: lsmeans (≥ 2.25.5), StepReg (≥ 1.5.0)
Published: 2026-05-19
DOI: 10.32614/CRAN.package.JM4QTN
Author: Junhui Li [aut, cre], Wenxin Liu [aut]
Maintainer: Junhui Li <ljh.biostat at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
Language: en-US
Materials: README
CRAN checks: JM4QTN results

Documentation:

Reference manual: JM4QTN.html , JM4QTN.pdf

Downloads:

Package source: JM4QTN_1.0.0.tar.gz
Windows binaries: r-devel: JM4QTN_1.0.0.zip, r-release: JM4QTN_1.0.0.zip, r-oldrel: JM4QTN_1.0.0.zip
macOS binaries: r-release (arm64): JM4QTN_1.0.0.tgz, r-oldrel (arm64): JM4QTN_1.0.0.tgz, r-release (x86_64): JM4QTN_1.0.0.tgz, r-oldrel (x86_64): JM4QTN_1.0.0.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=JM4QTN to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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