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Generates three inter-related genomic datasets: methylation, gene expression and protein expression having user specified cluster patterns. The simulation utilizes the realistic inter- and intra- relationships from real DNA methylation, mRNA expression and protein expression data from the TCGA ovarian cancer study, Chalise (2016) <doi:10.1016/j.cmpb.2016.02.011>.
| Version: | 2.3.0 |
| Depends: | R (≥ 3.5.0), MASS, NMF, tools |
| Published: | 2025-01-10 |
| DOI: | 10.32614/CRAN.package.InterSIM |
| Author: | Prabhakar Chalise [aut, cre], Rama Raghavan [aut], Brooke Fridley [aut] |
| Maintainer: | Prabhakar Chalise <pchalise at kumc.edu> |
| License: | GPL-2 | GPL-3 [expanded from: GPL] |
| NeedsCompilation: | no |
| CRAN checks: | InterSIM results |
| Reference manual: | InterSIM.pdf |
| Package source: | InterSIM_2.3.0.tar.gz |
| Windows binaries: | r-devel: InterSIM_2.3.0.zip, r-release: InterSIM_2.3.0.zip, r-oldrel: InterSIM_2.3.0.zip |
| macOS binaries: | r-release (arm64): InterSIM_2.3.0.tgz, r-oldrel (arm64): InterSIM_2.3.0.tgz, r-release (x86_64): InterSIM_2.3.0.tgz, r-oldrel (x86_64): InterSIM_2.3.0.tgz |
| Old sources: | InterSIM archive |
| Reverse depends: | IntNMF |
| Reverse imports: | M3JF |
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These binaries (installable software) and packages are in development.
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