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ISOpureR: Deconvolution of Tumour Profiles

Deconvolution of mixed tumour profiles into normal and cancer for each patient, using the ISOpure algorithm in Quon et al. Genome Medicine, 2013 5:29. Deconvolution requires mixed tumour profiles and a set of unmatched "basis" normal profiles.

Version: 1.1.3
Depends: R (≥ 3.1.1)
Imports: Rcpp (≥ 0.11.3), stats, futile.logger
LinkingTo: Rcpp, RcppEigen (≥ 0.3.2.2.0)
Suggests: knitr
Published: 2019-05-11
DOI: 10.32614/CRAN.package.ISOpureR
Author: Gerald Quon [aut], Catalina V Anghel [aut, trl], Syed Haider [aut], Francis Nguyen [aut], Amit G Deshwar [aut], Quaid D Morris [aut], Paul C Boutros [aut, cre]
Maintainer: Paul C Boutros <pboutros at mednet.ucla.edu>
License: GPL-2
NeedsCompilation: yes
Materials: NEWS
CRAN checks: ISOpureR results

Documentation:

Reference manual: ISOpureR.pdf
Vignettes: Guide for using ISOpureR

Downloads:

Package source: ISOpureR_1.1.3.tar.gz
Windows binaries: r-devel: ISOpureR_1.1.3.zip, r-release: ISOpureR_1.1.3.zip, r-oldrel: ISOpureR_1.1.3.zip
macOS binaries: r-release (arm64): ISOpureR_1.1.3.tgz, r-oldrel (arm64): ISOpureR_1.1.3.tgz, r-release (x86_64): ISOpureR_1.1.3.tgz, r-oldrel (x86_64): ISOpureR_1.1.3.tgz
Old sources: ISOpureR archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=ISOpureR to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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