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hm_normalize() — post-computation
normalisation helper (new function). Apply z-score, rank-based
inverse-normal transform (Rankit), min-max, or robust median/MAD scaling
to any marker output data frame. Use cols to target
specific columns and skip_cols to protect covariates
(e.g. age, BMI) from being rescaled. This covers domain functions whose
internal normalize argument currently has no effect
(glycemic_markers(), lipid_markers(),
renal_markers(), etc.). See
?hm_normalize.
Multi-biobank column inference (major). The
internal synonym dictionary
(.hm_default_col_patterns_exact()) now recognises
column-naming conventions from 15+ major cohort studies and biobanks for
all primary analytes:
_0_0 / _1_0
field naming (e.g. glucose_0_0,
creatinine_0_0, vitamin_d_0_0);
standing_height, 25OHD.LBXGLU, LBXSCH, BPXSY1,
URXUMA).NPU01994 for creatinine, NPU01567 for
cholesterol, NPU03609 for haemoglobin, etc.) and Danish
clinical labels (kreatinin, kolesterol,
blodsukker, leukocytter,
trombocytter, d_vitamin).blodsukkerfasting,
systolisk_blodtrykk, triglyserider,
karbamid, kjonn,
midjeomkrets).glukos, urinsyra, leukocyter,
trombocyter, kön, längd,
vikt).glukoosi, kolesteroli,
kreatiniini, hemoglobiini,
sukupuoli, virtsahappo,
leukosyytit, ferritiini,
D_vitamiini).glukoos, kolesterool,
kreatiniin, hemoglobiin,
naatrium, kaalium, vanus,
sugu).nuchtere_glucose,
totaal_cholesterol, urinezuur,
ureum, leukocyten, hemoglobine,
vitamine_D, tailleomtrek).SBP_mean, DBP_mean, genetic_sex,
ethnic_group.LOINC_XXXX_X format for all major analytes
(e.g. LOINC_2345_7 for fasting glucose,
LOINC_2160_0 for creatinine, LOINC_718_7 for
haemoglobin).Cholesterin, Triglyzeride,
Harnsäure, Harnstoff, Leukozyten,
Thrombozyten).Added hm_col_report() — an interactive
column-mapping diagnostic. Call hm_col_report(your_data)
before running any computation to see a formatted table
of which internal keys were matched to columns in your data and how
(exact synonym, case-insensitive, substring, or fuzzy), plus a
ready-to-paste col_map template for any unmatched
keys.
The function uses a five-layer matching pipeline and returns the matched
mappings invisibly so the result can be passed directly as
col_map to any HealthMarkers function.
Auto-derivation of computed inputs.
.hm_global_precompute() now automatically derives 18+
secondary columns before marker computation begins, so functions that
require (e.g.) eGFR, UACR, WHR,
LDL_c, or waist no longer fail silently when
only the raw inputs are present. Affected keys include eGFR
(from creatinine/age/sex via CKD-EPI), WHR (from
waist and hip), UACR (from
u_albumin / u_creatinine), LDL_c
(Friedewald from TC/HDL_c/TG), MAP, PP,
BMI (from height/weight), and more.
Expanded the internal synonym dictionary
(R/utils_infer-cols.R) for all variable groups,
additionally incorporating:
TryG, TAG,
TRIG, triacylglycerol;
SGPT/GPT/ALAT;
hsCRP/hs_CRP)_0, _1,
_3, _5)adiposity_sds(): fixed fn_name lookup bug
that caused incorrect error messages when validation failed on
non-standard column names.hm_col_report() to hm_fmt_col_map() to avoid a
name collision with the new exported function.liver_fat_markers() for hepatic steatosis and
fibrosis index calculation.nfl_marker() for plasma neurofilament light chain
(NfL) z-score computation.impute_missing() for within-row imputation of
missing biomarker values.pulmo_markers(): fixed column-inference logic for
spirometry z-score inputs."debug" level when verbose = FALSE, so
that getOption("healthmarkers.verbose") controls visibility
consistently across every function."debug" level (independent of the per-call
verbose argument) in bone_markers(),
ckd_stage(), and corrected_calcium().all_health_markers(): column inference is now keyed to
the requested groups, falls back to regex-based
infer_cols() when exact matches fail, and reports per-group
status (including missing optional packages) in verbose summaries.cvd_risk_qrisk3() now
prefers the correctly named ethnicity column (typo
tolerated for backward compatibility), and optional dependency errors
now report the missing package name consistently.hm_validate_inputs() so duplicate/empty mappings are caught
uniformly._pkgdown.yml that lists all 46
vignettes in the articles index for the pkgdown site.These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.