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Hydrogen/Deuterium eXchange Mass Spectrometry (HDX-MS) is a staple technology in structural proteomics. HaDeX provides a analytic workflow for HDX-MS data available both as web server or R package, accompanied by dedicated application HaDeXGUI. This is a second version on previously published HaDeX.
You can install the latest development version of the package:
devtools::install_github("hadexversum/HaDeX2")After installation GUI can be accessed locally:
library(HaDeX2)
HaDeX_GUI()To run the GUI, the dedicated package HaDeXGUI is needed. If is not installed, the called function will check and inform if installation is needed.
The HaDeX documentation is available online.
This work is supported by Foundation of Polish Science (TEAM TECH CORE FACILITY/2016-2/2 Mass Spectrometry of Biopharmaceuticals - improved methodologies for qualitative, quantitative and structural characterization of drugs, proteinaceous drug targets and diagnostic molecules), Narodowe Centrum Nauki (Preludium Bis 1 2019/35/O/NZ2/03745 Wysokorozdzielcza analiza danych z eksperymentów wymiany proton-deuter monitorowanych spektrometrią mas) as well as (Sonata 19 2023/51/D/NZ7/02847 Ujarzmić agregację z AmyloGraphem 2.0: baza danych i model predykcyjny modulatorów samoorganizacji amyloidowej), and Narodowa Agencja Wymiany Akademickiej (PPN/STA/2021/1/00025).
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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