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Functions for processing, analysis and visualization of Hydrogen Deuterium eXchange monitored by Mass Spectrometry experiments (HDX-MS) (10.1093/bioinformatics/btaa587). 'HaDeX' introduces a new standardized and reproducible workflow for the analysis of the HDX-MS data, including novel uncertainty intervals. Additionally, it covers data exploration, quality control and generation of publication-quality figures. All functionalities are also available in the in-built 'Shiny' app.
Version: | 1.2.2 |
Depends: | R (≥ 3.0) |
Imports: | data.table, dplyr, DT, ggplot2, gsubfn, latex2exp, reshape2, readr, readxl, shiny, stringr, tidyr |
Suggests: | spelling, covr, digest, gridExtra, knitr, pander, renv, rmarkdown, shinycssloaders, shinyhelper, shinyjs, testthat, vdiffr |
Published: | 2021-08-12 |
DOI: | 10.32614/CRAN.package.HaDeX |
Author: | Weronika Puchala |
Maintainer: | Weronika Puchala <puchala.weronika at gmail.com> |
License: | GPL-3 |
NeedsCompilation: | no |
Language: | en-US |
Materials: | README ChangeLog |
In views: | ChemPhys |
CRAN checks: | HaDeX results |
Reference manual: | HaDeX.pdf |
Vignettes: |
HaDeX: Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass Spectrometry Data Data processing Mass calculation Data aggregation |
Package source: | HaDeX_1.2.2.tar.gz |
Windows binaries: | r-devel: HaDeX_1.2.2.zip, r-release: HaDeX_1.2.2.zip, r-oldrel: HaDeX_1.2.2.zip |
macOS binaries: | r-release (arm64): HaDeX_1.2.2.tgz, r-oldrel (arm64): HaDeX_1.2.2.tgz, r-release (x86_64): HaDeX_1.2.2.tgz, r-oldrel (x86_64): HaDeX_1.2.2.tgz |
Old sources: | HaDeX archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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