HaDeX: Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass Spectrometry Data

Functions for processing, analysis and visualization of Hydrogen Deuterium eXchange monitored by Mass Spectrometry experiments (HDX-MS) (10.1093/bioinformatics/btaa587). 'HaDeX' introduces a new standardized and reproducible workflow for the analysis of the HDX-MS data, including novel uncertainty intervals. Additionally, it covers data exploration, quality control and generation of publication-quality figures. All functionalities are also available in the in-built 'Shiny' app.

Version:	1.2.2
Depends:	R (≥ 3.0)
Imports:	data.table, dplyr, DT, ggplot2, gsubfn, latex2exp, reshape2, readr, readxl, shiny, stringr, tidyr
Suggests:	spelling, covr, digest, gridExtra, knitr, pander, renv, rmarkdown, shinycssloaders, shinyhelper, shinyjs, testthat, vdiffr
Published:	2021-08-12
DOI:	10.32614/CRAN.package.HaDeX
Author:	Weronika Puchala [cre, aut], Michal Burdukiewicz [aut], Dominik Rafacz [ctb]
Maintainer:	Weronika Puchala <puchala.weronika at gmail.com>
License:	GPL-3
NeedsCompilation:	no
Language:	en-US
Materials:	README ChangeLog
In views:	ChemPhys
CRAN checks:	HaDeX results

Documentation:

Reference manual:	HaDeX.pdf
Vignettes:	HaDeX: Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass Spectrometry Data Data processing Mass calculation Data aggregation

Downloads:

Package source:	HaDeX_1.2.2.tar.gz
Windows binaries:	r-devel: HaDeX_1.2.2.zip, r-release: HaDeX_1.2.2.zip, r-oldrel: HaDeX_1.2.2.zip
macOS binaries:	r-release (arm64): HaDeX_1.2.2.tgz, r-oldrel (arm64): HaDeX_1.2.2.tgz, r-release (x86_64): HaDeX_1.2.2.tgz, r-oldrel (x86_64): HaDeX_1.2.2.tgz
Old sources:	HaDeX archive

Linking:

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