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Detection of haplotype patterns that include single nucleotide polymorphisms (SNPs) and non-contiguous haplotypes that are associated with a phenotype. Methods for implementing HTRX are described in Yang Y, Lawson DJ (2023) <doi:10.1093/bioadv/vbad038> and Barrie W, Yang Y, Irving-Pease E.K, et al (2024) <doi:10.1038/s41586-023-06618-z>.
Version: | 1.2.4 |
Depends: | R (≥ 4.0.0) |
Imports: | fastglm, caret, parallel, methods, stats, glmnet, tune, recipes |
Suggests: | knitr, rmarkdown |
Published: | 2024-02-09 |
DOI: | 10.32614/CRAN.package.HTRX |
Author: | Yaoling Yang |
Maintainer: | Yaoling Yang <yaoling.yang at bristol.ac.uk> |
License: | GPL-3 |
NeedsCompilation: | no |
Materials: | README |
CRAN checks: | HTRX results |
Reference manual: | HTRX.pdf |
Vignettes: |
HTRX_vignette |
Package source: | HTRX_1.2.4.tar.gz |
Windows binaries: | r-devel: HTRX_1.2.4.zip, r-release: HTRX_1.2.4.zip, r-oldrel: HTRX_1.2.4.zip |
macOS binaries: | r-release (arm64): HTRX_1.2.4.tgz, r-oldrel (arm64): HTRX_1.2.4.tgz, r-release (x86_64): HTRX_1.2.4.tgz, r-oldrel (x86_64): HTRX_1.2.4.tgz |
Old sources: | HTRX archive |
Please use the canonical form https://CRAN.R-project.org/package=HTRX to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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