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The 'Grouphmap' was implemented in R, an open-source programming environment, and was released under the provided website. The difference analysis is based on the 'limma' package, which can cover gene and protein expression profiles (Reference: Matthew E Ritchie , Belinda Phipson , Di Wu , Yifang Hu , Charity W Law , Wei Shi , Gordon K Smyth (2015) <doi:10.1093/nar/gkv007>). The GO enrichment analysis is based on the 'clusterProfiler' package and supports three common species: human, mouse, and yeast (Reference: Guangchuang Yu, Li-Gen Wang, Yanyan Han, Qing-Yu He (2012) <doi:10.1089/omi.2011.0118>). The results of batch difference analysis and enrichment analysis are output in separate folders for easy viewing and further visualization of the results during the process. The results returned a heatmap in R and exported to 3 folders named DEG, go, and merge.
| Version: | 1.0.0 |
| Depends: | R (≥ 4.2.0) |
| Imports: | limma, clusterProfiler, dplyr, org.Mm.eg.db, pheatmap, stringr, stats, utils, grDevices |
| Published: | 2023-09-04 |
| Author: | Yuchen Sun [aut, cre] |
| Maintainer: | Yuchen Sun <yuchensun2436 at 163.com> |
| License: | Artistic-2.0 |
| NeedsCompilation: | no |
| CRAN checks: | Grouphmap results |
| Reference manual: | Grouphmap.pdf |
| Package source: | Grouphmap_1.0.0.tar.gz |
| Windows binaries: | r-devel: Grouphmap_1.0.0.zip, r-release: Grouphmap_1.0.0.zip, r-oldrel: Grouphmap_1.0.0.zip |
| macOS binaries: | r-release (arm64): not available, r-oldrel (arm64): Grouphmap_1.0.0.tgz, r-release (x86_64): Grouphmap_1.0.0.tgz, r-oldrel (x86_64): not available |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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