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GeneScape: Simulation of Single Cell RNA-Seq Data with Complex Structure

Simulating single cell RNA-seq data with complicated structure. This package is developed based on the Splat method (Zappia, Phipson and Oshlack (2017) <doi:10.1186/s13059-017-1305-0>). 'GeneScape' incorporates additional features to simulate single cell RNA-seq data with complicated differential expression and correlation structures, such as sub-cell-types, correlated genes (pathway genes) and hub genes.

Version: 1.0
Imports: MASS (≥ 7.3-53.1), corpcor (≥ 1.6.10), stats
Published: 2023-06-13
DOI: 10.32614/CRAN.package.GeneScape
Author: Qi Gao [aut, cre]
Maintainer: Qi Gao <qi.gao at duke.edu>
License: GPL (≥ 3)
NeedsCompilation: no
CRAN checks: GeneScape results

Documentation:

Reference manual: GeneScape.pdf

Downloads:

Package source: GeneScape_1.0.tar.gz
Windows binaries: r-devel: GeneScape_1.0.zip, r-release: GeneScape_1.0.zip, r-oldrel: GeneScape_1.0.zip
macOS binaries: r-release (arm64): GeneScape_1.0.tgz, r-oldrel (arm64): GeneScape_1.0.tgz, r-release (x86_64): GeneScape_1.0.tgz, r-oldrel (x86_64): GeneScape_1.0.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=GeneScape to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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