| Type: | Package |
| Title: | Population Genetics Statistics for Selective Sweep |
| Version: | 0.1.0 |
| Imports: | vcfR |
| Description: | Selective Sweep can be calculated by five significant Population Genetics Statistics such as "Pi", "Wattersons_theta", "Tajima_D", "Kelly_ZnS" and "Omega" Statistics in specified chromosomal region. It has been developed by using the concept of "Kern" and "Schrider" (2018)<doi:10.1534/g3.118.200262>. |
| License: | GPL-3 |
| Encoding: | UTF-8 |
| RoxygenNote: | 7.3.2 |
| NeedsCompilation: | no |
| Packaged: | 2025-09-11 09:07:00 UTC; Abhik |
| Author: | Abhik Sarkar [aut, cre], Dwijesh Chandra Mishra [aut], Dipro Sinha [aut], Saikath Das [aut], Krishna Kumar Chaturvedi [aut], Shashi Bhushan Lal [aut], Sanjeev Kumar [aut], Ranjit Kumar Paul [aut], Girish Kumar Jha [aut], Neeraj Budhlakoti [aut], Md Yeasin [aut] |
| Maintainer: | Abhik Sarkar <abhik.iasri@gmail.com> |
| Repository: | CRAN |
| Date/Publication: | 2025-09-16 06:20:02 UTC |
Title GenePopStats: Population Genetics Statistics for Selective Sweep
Description
Title GenePopStats: Population Genetics Statistics for Selective Sweep
Usage
GenePopStats(vcf_file, window_size, step_size)
Arguments
vcf_file |
Enter the path to VCF File |
window_size |
Length of the genomic region |
step_size |
Length of slide in the window in forward direction |
Value
Results are being obtained as a matrix containing 5 Population Summary Statistics such as "Pi", "Wattersons_theta", "Tajima_D", "Kelly_ZnS" and "Omega" Statistics subdivided into windows as specified chromosomal region
Examples
path<-system.file("exdata", "ExampleVCF.vcf", package = "GenePopStats")
GenePopStats(path, 20, 10)