The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.

GBJ: Generalized Berk-Jones Test for Set-Based Inference in Genetic Association Studies

Offers the Generalized Berk-Jones (GBJ) test for set-based inference in genetic association studies. The GBJ is designed as an alternative to tests such as Berk-Jones (BJ), Higher Criticism (HC), Generalized Higher Criticism (GHC), Minimum p-value (minP), and Sequence Kernel Association Test (SKAT). All of these other methods (except for SKAT) are also implemented in this package, and we additionally provide an omnibus test (OMNI) which integrates information from each of the tests. The GBJ has been shown to outperform other tests in genetic association studies when signals are correlated and moderately sparse. Please see the vignette for a quickstart guide or Sun and Lin (2017) <doi:10.48550/arXiv.1710.02469> for more details.

Version: 0.5.4
Depends: R (≥ 2.10)
Imports: Rcpp (≥ 0.12.7), mvtnorm, SKAT, stats, BH
LinkingTo: Rcpp, BH
Suggests: knitr, rmarkdown, bindata, rje, testthat
Published: 2024-01-31
DOI: 10.32614/CRAN.package.GBJ
Author: Ryan Sun [aut, cre]
Maintainer: Ryan Sun <ryansun.work at gmail.com>
License: GPL-3
NeedsCompilation: yes
Materials: README
CRAN checks: GBJ results

Documentation:

Reference manual: GBJ.pdf
Vignettes: Generalized Berk-Jones (GBJ) Tutorial

Downloads:

Package source: GBJ_0.5.4.tar.gz
Windows binaries: r-devel: GBJ_0.5.4.zip, r-release: GBJ_0.5.4.zip, r-oldrel: GBJ_0.5.4.zip
macOS binaries: r-release (arm64): GBJ_0.5.4.tgz, r-oldrel (arm64): GBJ_0.5.4.tgz, r-release (x86_64): GBJ_0.5.4.tgz, r-oldrel (x86_64): GBJ_0.5.4.tgz
Old sources: GBJ archive

Reverse dependencies:

Reverse imports: DBpower, sGBJ, sumFREGAT

Linking:

Please use the canonical form https://CRAN.R-project.org/package=GBJ to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.