The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
DNA methylation of 5-methylcytosine (5mC) is the result of a multi-step, enzyme-dependent process. Predicting these sites in-vitro is laborious, time consuming as well as costly. This ' Gb5mC-Pred ' package is an in-silico pipeline for predicting DNA sequences containing the 5mC sites. It uses a machine learning approach which uses Stochastic Gradient Boosting approach for prediction of the sequences with 5mC sites. This package has been developed by using the concept of Navarez and Roxas (2022) <doi:10.1109/TCBB.2021.3082184>.
| Version: | 0.1.0 |
| Imports: | stats, devtools, tidyverse, seqinr, Biostrings, splitstackshape, entropy, party, stringr, tibble, doParallel, parallel, e1071, caret, randomForest, gbm, foreach, ftrCOOL, iterators |
| Suggests: | testthat (≥ 3.0.0) |
| Published: | 2023-07-11 |
| DOI: | 10.32614/CRAN.package.GB5mcPred |
| Author: | Dipro Sinha [aut, cre], Sunil Archak [aut], Dwijesh Chandra Mishra [aut], Tanwy Dasmandal [aut], Md Yeasin [aut] |
| Maintainer: | Dipro Sinha <diprosinha at gmail.com> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| CRAN checks: | GB5mcPred results |
| Reference manual: | GB5mcPred.pdf |
| Package source: | GB5mcPred_0.1.0.tar.gz |
| Windows binaries: | r-devel: GB5mcPred_0.1.0.zip, r-release: GB5mcPred_0.1.0.zip, r-oldrel: GB5mcPred_0.1.0.zip |
| macOS binaries: | r-release (arm64): GB5mcPred_0.1.0.tgz, r-oldrel (arm64): GB5mcPred_0.1.0.tgz, r-release (x86_64): GB5mcPred_0.1.0.tgz, r-oldrel (x86_64): GB5mcPred_0.1.0.tgz |
Please use the canonical form https://CRAN.R-project.org/package=GB5mcPred to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.