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In detecting discrete functional patterns model free, the adapted functional chi-squared test (AdpFunChisq) offers a single test statistic to quantify functional strength and direction between two discrete random variables. It promotes functional patterns over non-functional or independent patterns. Extended from the functional chi-squared (FunChisq) test, AdpFunChisq is preferable when prioritizing multiple relationships that are contained in contingency tables of various dimensions.
Here, we illustrate how AdpFunChisq is advantageous over the original FunChisq or conditional entropy in determining functional direction and strength.
If a function is a many-to-one mapping, then its inverse is not a function. In this context, the three methods can behave sharply differently depending on table shape: square (same numbers of rows and columns), landscape (more columns than rows), or portrait (more rows than columns). Here the row variable is the independent variable \(X\) and the column variable is the dependent variable \(Y\). Each method tests whether \(Y\) is a function of \(X\) on the original table; then it tests whether \(X\) is a function of \(Y\) on the transposed table. We use \(p\)-values for the two FunChisq methods and the conditional entropy \(H(Y|X)\). In all three methods, a smaller value indicates a stronger functional direction.
We will show by three examples that only AdpFunChisq performs
consistently well on all three table types. Below is a generic function
compare.methods
to visualize the input contingency table,
perform the tests, and report the correctness of the function
direction.
require(FunChisq)
require(infotheo)
require(DescTools)
compare.methods <- function(func)
{
plot_table(func, xlab = 'Y', ylab = 'X', value.cex = 0.9, col="seagreen",
main = expression("Function:"~italic(Y%~~%f(X))))
plot_table(t(func), xlab = 'X', ylab = 'Y', value.cex = 0.9, col="firebrick1",
main = expression("Inverse non-function:"~ italic(X != f^-1*(Y))))
sample.matrix <- Untable(func)
x <- as.numeric(sample.matrix[, 1])
y <- as.numeric(sample.matrix[, 2])
H.y.given.x <- condentropy( y, x )
H.x.given.y <- condentropy( x, y )
if(H.y.given.x < H.x.given.y) {
cat("Conditional entropy picked CORRECT direction X to Y: H(Y|X) =",
format(H.y.given.x, digits = 2), "< H(X|Y) =",
format(H.x.given.y, digits = 2), "\n")
} else {
cat("Conditional entropy picked *WRONG* direction Y to X: H(Y|X) =",
format(H.y.given.x, digits = 2), ">= H(X|Y) =",
format(H.x.given.y, digits = 2), "\n")
}
func.fc.pval <- fun.chisq.test(func)$p.value
ifunc.fc.pval <- fun.chisq.test(t(func))$p.value
if(func.fc.pval < ifunc.fc.pval) {
cat("Original FunChisq picked CORRECT direction X to Y: p(X->Y) =",
format(func.fc.pval, digits = 2), "< p(Y->X) =",
format(ifunc.fc.pval, digits = 2), "\n")
} else {
cat("Original FunChisq picked *WRONG* direction Y to X: p(X->Y) =",
format(func.fc.pval, digits = 2), ">= p(Y->X) =",
format(ifunc.fc.pval, digits = 2), "\n")
}
func.afc.pval <- fun.chisq.test(func, method="adapted")$p.value
ifunc.afc.pval <- fun.chisq.test(t(func), method="adapted")$p.value
if(func.afc.pval < ifunc.afc.pval) {
cat("Adapted FunChisq picked CORRECT direction X to Y: p(X->Y) =",
format(func.afc.pval, digits = 2), "< p(Y->X) =",
format(ifunc.afc.pval, digits = 2), "\n")
} else {
cat("Adapted FunChisq picked *WRONG* direction Y to X: p(X->Y) =",
format(func.afc.pval, digits = 2), ">= p(Y->X) =",
format(ifunc.afc.pval, digits = 2), "\n")
}
}
In this example, all three methods performed correctly.
#> Conditional entropy picked CORRECT direction X to Y: H(Y|X) = 0.77 < H(X|Y) = 0.88
#> Original FunChisq picked CORRECT direction X to Y: p(X->Y) = 0.027 < p(Y->X) = 0.059
#> Adapted FunChisq picked CORRECT direction X to Y: p(X->Y) = 0.027 < p(Y->X) = 0.059
In this example, conditional entropy failed to detect the correct functional direction.
#> Conditional entropy picked *WRONG* direction Y to X: H(Y|X) = 1 >= H(X|Y) = 0.9
#> Original FunChisq picked CORRECT direction X to Y: p(X->Y) = 0.022 < p(Y->X) = 0.12
#> Adapted FunChisq picked CORRECT direction X to Y: p(X->Y) = 0.017 < p(Y->X) = 0.12
In this example, the original FunChisq could not detect the correct functional direction.
#> Conditional entropy picked CORRECT direction X to Y: H(Y|X) = 0.45 < H(X|Y) = 0.9
#> Original FunChisq picked *WRONG* direction Y to X: p(X->Y) = 0.049 >= p(Y->X) = 0.046
#> Adapted FunChisq picked CORRECT direction X to Y: p(X->Y) = 0.049 < p(Y->X) = 0.34
The \(p\)-value of the AdpFunChisq is also a good indicator of the strength of a functional relationship \(Y=f(X)\) over an independent relationship where \(X \perp Y\).
In this example, conditional entropy failed to prioritize a functional pattern over an empirically independent pattern which is also a constant function.
# approximately functional pattern
func = matrix(c(
8, 0, 1, 0,
1, 8, 1, 1,
8, 1, 1, 0
), nrow=3, ncol=4, byrow=TRUE)
# empirically independent (constant) pattern
const = matrix(c(
9, 0, 0, 0,
11, 0, 0, 0,
10, 0, 0, 0
), nrow=3, ncol=4, byrow=TRUE)
# calculate the AdpFunChisq P-value of 'func' and 'const' tables, lower the better.
func_afc = fun.chisq.test(func, method="adapted")
const_afc = fun.chisq.test(const, method="adapted")
# calculate the Conditional Entropy scores of 'func' and 'const' tables, lower the better.
sample.matrix = Untable(func)
x <- as.numeric(sample.matrix[,1])
y <- as.numeric(sample.matrix[,2])
func_H = condentropy(y, x)
sample.matrix = Untable(const)
x <- as.numeric(sample.matrix[,1])
y <- as.numeric(sample.matrix[,2])
const_H = condentropy(y, x)
# plot table with AdpFunChisq and Conditional Entropy Scores
# functional pattern
plot_table(
func, xlab = 'Y', ylab = 'X', value.cex = 0.9, cex.main=0.9, col="seagreen",
main=paste0("AdpFunChisq P = ", format(func_afc$p.value, digits = 2),
"\nConditional Entropy = ", format(func_H, digits = 2)))
# constant pattern
plot_table(
const, xlab = 'Y', ylab = 'X', value.cex = 0.9, cex.main=0.9, col="firebrick1",
main=paste0("AdpFunChisq P = ", format(const_afc$p.value, digits = 2),
"\nConditional Entropy = ", format(const_H, digits = 2)))
Here, AdpFunChisq correctly rated the functional pattern (\(p\)-value=0.001181) stronger than the independent pattern (\(p\)-value=1); while conditional entropy incorrectly rated the former more poorly (0.6423708) than the latter (0).
In functional inference model free, we recommend the adapted FunChisq test when tables are of different shape or dimension; otherwise, the original FunChisq test is adequate. We generally do not recommend conditional entropy for inferring non-constant function patterns.
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