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FastSegmentation: Unsupervised Cell Segmentation by Fast Gaussian Processes

Performs fast Gaussian process-based segmentation of microscopy images using spatial smoothing and data-driven thresholding. Code based on Baracaldo, L., King, B., Yan, H., Lin, Y., Miolane, N., & Gu, M. (2025). "Unsupervised cell segmentation by fast Gaussian processes." arXiv preprint <doi:10.48550/arXiv.2505.18902>.

Version: 0.0.1
Imports: EBImage, stats, magick, pracma, RobustGaSP
Suggests: plot3D
Published: 2026-06-08
DOI: 10.32614/CRAN.package.FastSegmentation
Author: Blythe King [aut, cre], Haoran Yan [aut], Laura Baracaldo [aut], Mengyang Gu [aut]
Maintainer: Blythe King <blyking at gmail.com>
License: MIT + file LICENSE
NeedsCompilation: no
CRAN checks: FastSegmentation results

Documentation:

Reference manual: FastSegmentation.html , FastSegmentation.pdf

Downloads:

Package source: FastSegmentation_0.0.1.tar.gz
Windows binaries: r-devel: FastSegmentation_0.0.1.zip, r-release: FastSegmentation_0.0.1.zip, r-oldrel: FastSegmentation_0.0.1.zip
macOS binaries: r-release (arm64): FastSegmentation_0.0.1.tgz, r-oldrel (arm64): not available, r-release (x86_64): FastSegmentation_0.0.1.tgz, r-oldrel (x86_64): FastSegmentation_0.0.1.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=FastSegmentation to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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