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IMPROVEMENTS
BUG FIXES
- Fixed broken examples for InDegree, OutDegree and
IngoingContactChain.
IMPROVEMENTS
IMPROVEMENTS
Renamed the NEWS file to NEWS.md and
changed to use markdown format style.
Removed the dependency to the plyr package for building pdf
reports.
Added orcid id:s in the DESCRIPTION file for the package
authors.
Changed the file extension for files in the R folder from ‘.r’ to
‘.R’.
Used roxygen2 ver 7.1.1 to build the documentation.
BUG FIXES
- Added the missing table for direct outgoing contacts in the html
report.
IMPROVEMENTS
- Set ‘stringsAsFactors = FALSE’ in the data.frame returned by
‘NetworkSummary’.
BUG FIXES
- Fix format of authors in CITATION file.
BUG FIXES
- Added missing calls to ‘R_forceSymbols’ and ‘R_useDynamicSymbols’ in
the C init function.
IMPROVEMENTS
- Added the ‘maxDistance’ argument to the ‘Trace’ method to stop
contact tracing at ‘maxDistance’ (inclusive) from the root node. Default
is ‘NULL’ i.e. to not use the ‘maxDistance’ stop criteria.
BUG FIXES
- Fixed build failure on the Solaris platform.
CHANGES
Removed Animate method to pass the CRAN checks. Install version
0.8.8 manually from the archive if that method is required. See section
6.3 in ‘R Installation and Administration’ on how to install packages
from source.
Removed dependencies to plyr, R2HTML and Rcpp.
Removed usage of testthat when testing the package.
Removed list methods for ContactTrace objects. When calculating
measures for several roots, the purpose is to use methods that work
directly on the data.frame with movements.
Updated maintainer email
Changed ‘Title’ field in DESCRIPTION to title case
- Improved performance when calculating ShortestPaths on a data.frame
of movements.
BUG FIXES
NOTE
- Changed argument representation to slots in setClass for the two S4
classes ContactTrace and Contacts. The package now requires
R>=3.0.0
NOTE
- Plots are not supported in version 0.8.6 since igraph0 has been
archived. We intend to resolve the issue in a future version. Install
version 0.8.5 and igraph0 manually from the archive if plots are
required. See section 6.3 in ‘R Installation and Administration’ on how
to install packages from source.
NEW FEATURES
- Updated DESCRIPTION to use Imports instead of Depends for igraph0,
plyr, R2HTML.
NEW FEATURES
- Added method ReportObject to be called from a Sweave report template
to get the current ContactTrace object.
NEW FEATURES
inDays and outDays now returned as integer from NetworkSummary of
a ContactTrace object.
Added ‘all’ to interval argument in Animate to view visualize all
movements in one image. The default interval argument was changed to
‘all’.
BUGFIX
- Fixed a bug that was introduced in ver 0.7.6 when performing contact
tracing.
BUGFIX
- Fixed a bug that was introduced in ver 0.7.6 when calculating
IngoingContactChain and OutgoingContactChain using NetworkSummary.
NEW FEATURES
- Using the the animation and ggmap package, contacts can now be
visualized and animated.
- Improved performance when calculating contact chain in C++ code by
counting the number of visited nodes more efficient.
NEW FEATURES
- Report now uses match.arg to check output format.
NEW FEATURES
- Added the parameters inBegin, inEnd, outBegin and outEnd to
NetworkSummary to allow for different time windows for ingoing and
outgoing contacts.
BUG FIXES
- Fixed bug in Report. InDegree were not defined for the S4 class
Contacts.
NEW FEATURES
- Improved performance in C++ code by using visited nodes more
efficient
NEW FEATURES
BUG FIXES
NEW FEATURES
- When the methods Trace, NetworkSummary, InDegree, OutDegree,
IngoingContactChain, OutgoingContactChain are called with the arguments
movements, root, tEnd and days; the measures are calculated for each
combination of root, tEnd and days.
- Ongoing work to improve performance using Rcpp.
NEW FEATURES
- Changed from igraph to igraph0 to handle the update of igraph to
0.6.
BUG FIXES
- Fixed bug with Report of a list of ContactTrace objects. Each
ContactTrace object called Report with missing parameter clean.
BUG FIXES
- The html and pdf reports have been corrected. The table displaying
individual outgoing contacts erronously switched source and
destination.
NEW FEATURES
- Removed unused parameters from Report method.
NEW FEATURES
NEW FEATURES
NEW FEATURES
NEW FEATURES
- All documentation generated via roxygen.
BUG FIXES
- If movements contained duplicate contacts, they were all added. Now
only unique contacts are included from the contact tracing.
BUG FIXES
- ‘plot’ now works as intended for the S4 ContactTrace object with
only outgoing contacts
NEW FEATURES
NEW FEATURES
- Added the example dataset transfers
NEW FEATURES
BUG FIXES
- ‘show’ now works as intended for the S4 ContactTrace object
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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