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Provides a smooth mapping of multidimensional points into low-dimensional space defined by a self-organizing map. Designed to work with 'FlowSOM' and flow-cytometry use-cases. See Kratochvil et al. (2019) <doi:10.12688/f1000research.21642.1>.
| Version: | 2.1.2 |
| Depends: | R (≥ 3.2) |
| Imports: | FNN, ggplot2, igraph, Matrix, Rtsne, umap, uwot |
| Suggests: | knitr, rmarkdown |
| Published: | 2022-07-05 |
| DOI: | 10.32614/CRAN.package.EmbedSOM |
| Author: | Mirek Kratochvil [aut, cre], Sofie Van Gassen [cph], Britt Callebaut [cph], Yvan Saeys [cph], Ron Wehrens [cph] |
| Maintainer: | Mirek Kratochvil <exa.exa at gmail.com> |
| License: | GPL (≥ 3) |
| URL: | https://github.com/exaexa/EmbedSOM |
| NeedsCompilation: | yes |
| Citation: | EmbedSOM citation info |
| Materials: | README |
| CRAN checks: | EmbedSOM results [issues need fixing before 2025-01-10] |
| Reference manual: | EmbedSOM.pdf |
| Vignettes: |
EmbedSOM basic embedding |
| Package source: | EmbedSOM_2.1.2.tar.gz |
| Windows binaries: | r-devel: EmbedSOM_2.1.2.zip, r-release: EmbedSOM_2.1.2.zip, r-oldrel: EmbedSOM_2.1.2.zip |
| macOS binaries: | r-release (arm64): EmbedSOM_2.1.2.tgz, r-oldrel (arm64): EmbedSOM_2.1.2.tgz, r-release (x86_64): EmbedSOM_2.1.2.tgz, r-oldrel (x86_64): EmbedSOM_2.1.2.tgz |
| Old sources: | EmbedSOM archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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