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Provides a smooth mapping of multidimensional points into low-dimensional space defined by a self-organizing map. Designed to work with 'FlowSOM' and flow-cytometry use-cases. See Kratochvil et al. (2019) <doi:10.12688/f1000research.21642.1>.
Version: | 2.1.2 |
Depends: | R (≥ 3.2) |
Imports: | FNN, ggplot2, igraph, Matrix, Rtsne, umap, uwot |
Suggests: | knitr, rmarkdown |
Published: | 2022-07-05 |
DOI: | 10.32614/CRAN.package.EmbedSOM |
Author: | Mirek Kratochvil [aut, cre], Sofie Van Gassen [cph], Britt Callebaut [cph], Yvan Saeys [cph], Ron Wehrens [cph] |
Maintainer: | Mirek Kratochvil <exa.exa at gmail.com> |
License: | GPL (≥ 3) |
URL: | https://github.com/exaexa/EmbedSOM |
NeedsCompilation: | yes |
Citation: | EmbedSOM citation info |
Materials: | README |
CRAN checks: | EmbedSOM results |
Reference manual: | EmbedSOM.pdf |
Vignettes: |
EmbedSOM basic embedding |
Package source: | EmbedSOM_2.1.2.tar.gz |
Windows binaries: | r-devel: EmbedSOM_2.1.2.zip, r-release: EmbedSOM_2.1.2.zip, r-oldrel: EmbedSOM_2.1.2.zip |
macOS binaries: | r-release (arm64): EmbedSOM_2.1.2.tgz, r-oldrel (arm64): EmbedSOM_2.1.2.tgz, r-release (x86_64): EmbedSOM_2.1.2.tgz, r-oldrel (x86_64): EmbedSOM_2.1.2.tgz |
Old sources: | EmbedSOM archive |
Please use the canonical form https://CRAN.R-project.org/package=EmbedSOM to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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