EcoDiet: Estimating a Diet Matrix from Biotracer and Stomach Content Data

Biotracers and stomach content analyses are combined in a Bayesian hierarchical model to estimate a probabilistic topology matrix (all trophic link probabilities) and a diet matrix (all diet proportions). The package relies on the JAGS software and the 'jagsUI' package to run a Markov chain Monte Carlo approximation of the different variables.

Version:	2.0.1
Depends:	R (≥ 3.5)
Imports:	ggplot2 (≥ 3.2), coda (≥ 0.19), stats (≥ 3.6), utils (≥ 3.6), jagsUI (≥ 1.5.2), ggmcmc (≥ 1.1)
Suggests:	knitr, rmarkdown, devtools, testthat (≥ 3.0.0)
Published:	2024-03-25
DOI:	10.32614/CRAN.package.EcoDiet
Author:	Pierre-Yves Hernvann [cre, aut], Didier Gascuel [aut], Dorothee Kopp [aut], Marianne Robert [aut], Jerome Guitton [aut], Etienne Rivot [aut], Heloise Thero [aut]
Maintainer:	Pierre-Yves Hernvann <pierre.yves.hernvann at gmail.com>
BugReports:	https://github.com/pyhernvann/EcoDiet/issues
License:	GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL:	https://github.com/pyhernvann/EcoDiet
NeedsCompilation:	no
SystemRequirements:	JAGS (>= 4.3)
Citation:	EcoDiet citation info
Materials:	README NEWS
CRAN checks:	EcoDiet results

Documentation:

Reference manual:	EcoDiet.pdf
Vignettes:	3. How to deal with convergence problems 1. Introduction - How to use EcoDiet 2. EcoDiet explored on a realistic example

Downloads:

Package source:	EcoDiet_2.0.1.tar.gz
Windows binaries:	r-devel: EcoDiet_2.0.1.zip, r-release: EcoDiet_2.0.1.zip, r-oldrel: EcoDiet_2.0.1.zip
macOS binaries:	r-release (arm64): EcoDiet_2.0.1.tgz, r-oldrel (arm64): EcoDiet_2.0.1.tgz, r-release (x86_64): EcoDiet_2.0.1.tgz, r-oldrel (x86_64): EcoDiet_2.0.1.tgz
Old sources:	EcoDiet archive

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