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A feasible framework for mutation analysis and reverse transcription polymerase chain reaction (RT-PCR) assay evaluation of COVID-19, including mutation profile visualization, statistics and mutation ratio of each assay. The mutation ratio is conducive to evaluating the coverage of RT-PCR assays in large-sized samples. Mercatelli, D. and Giorgi, F. M. (2020) <doi:10.20944/preprints202004.0529.v1>.
Version: | 0.1.3 |
Depends: | R (≥ 3.6) |
Imports: | ggplot2, cowplot, seqinr, stringr, grDevices, graphics, utils, ggpubr, dplyr, VennDiagram |
Suggests: | testthat |
Published: | 2020-09-18 |
DOI: | 10.32614/CRAN.package.CovidMutations |
Author: | Shaoqian Ma |
Maintainer: | Shaoqian Ma <shaoqianma at qq.com> |
BugReports: | https://github.com/MSQ-123/CovidMutations/issues |
License: | Artistic-2.0 |
URL: | https://github.com/MSQ-123/CovidMutations |
NeedsCompilation: | no |
Materials: | README NEWS |
In views: | Epidemiology |
CRAN checks: | CovidMutations results |
Reference manual: | CovidMutations.pdf |
Package source: | CovidMutations_0.1.3.tar.gz |
Windows binaries: | r-devel: CovidMutations_0.1.3.zip, r-release: CovidMutations_0.1.3.zip, r-oldrel: CovidMutations_0.1.3.zip |
macOS binaries: | r-release (arm64): CovidMutations_0.1.3.tgz, r-oldrel (arm64): CovidMutations_0.1.3.tgz, r-release (x86_64): CovidMutations_0.1.3.tgz, r-oldrel (x86_64): CovidMutations_0.1.3.tgz |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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