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stopped using directive using namespace arma; in C++
code and included prefix arma:: to symbols from the
arma namespace (this had been only partially implemented in
v1.1.0, see the note for that version below). This avoids future
conflicts, e.g. with a forthcoming switch to compiling with
C++20.
moved lattice and RColorBrewer to Suggests.
declared that update.renewal is an S3 method (the
roxygen @export directive was missing).
in DESCRIPTION, corrected a URL that was accidentally pointing to another package.
changed the names of link functions imported from package VGAM to names ending with ‘link’, since the old names have been removed in VGAM v1.1-14. This is an internal change in the code of the package, the link functions providd by package Countr remain the same.
added missing (roxygen) export directive for the
modelMat method for predict.
reinstated bivariate distributions. This was done on users’ request but without careful verification if changes in the package done since they were removed cause problems.
a missing ‘@’ symbol had caused roxygen to generate items for ‘inheritParams’ in the arguments section of a couple of Rd files.
fixed new warnings from the C++ compiler like ’ RcppExports.cpp:528:18: warning: format string is not a string literal (potentially insecure) [-Wformat-security]’.
now import selectively from ‘dplyr’. Also, see the ‘todo’ note in ‘Countr-package.R’.
several documentation files had duplicated descriptions of some arguments.
changed several instances of class(...) = "..." to
use inherits.
changed http://www.football-data.co.uk/englandm.php to https://www.football-data.co.uk to fix a NOTE from R check.
switched from travisci to github actions.
changed maintainer.
fixed a doi reference in DESCRIPTION to be in proper format.
consolidation after the refactoring of the repository.
created pkgdown website.
dealt with ‘xtimes’ problem on Windows (issue#1: the data frame
returned by optimx_2018-7.10 on Windows has a column
xtime not xtimes).
a number of updates in connection of the forthcoming release of the JSS paper.
small adjustments before submission.
renamed ‘Countr.R’ to ‘Countr-package.R’.
updated the main vignette with the accepted version of the JSS paper.
Formula. The syntax
with argument anc remains available.se.coef.renewal() now prints a slightly more informative
message without raising a warning.type = "prob" for residuals - changes in
residuals.renewal, .objectiveFunction and
renewal(). Comments and asome examples are temporarily put
in the documentation of renewal()..objectiveFunction(). It is now
passed on to probability computing functions to specify whether logged
values are required when summa = FALSE.summary()) could be very wide (annoying in Sweave output),
now print.renewal() and
print.summary.renewal() obey ‘width’ when possible (see
helper function .deparseCall()).print.summary.renewal() when failure
to compute variance or residuals..checkInitialValues in the anc
parameters..objectiveFunction and predict with
std.error.conv_utils.cpp added (contains the convolution general
methods).getProbs_directConv,
getProbs_minConv; see tests for examples..Rbuildignore in the root directory of
the package.gam_weiH and gam_weiA renamed
ccX and ccY.dWeibullInterArrivalCountInd and
dWeibullInterArrivalCountFrankCopula improved.cRes object removed from “R/” to free some space.alphagen2 changed to alphagen.renamed alphagen to
alphagenOrig.
the signatures of the cpp functions now have namespace prefixes
for namespaces other than Rcpp. In this way RcppExports.cpp does not
need using namespace arma which is not included by
Rcpp::compileAttributes and devtools::test()
and so needed to be added manually after these calls.
I actually used search and replace to replace occurences in the body of the functions in our cpp files, but since we can put the ‘using namespace’ directives in them, only the signatures of exported functions are important for the above purpose.
replaced std::cout with calls to Rprintf() in C++ code, since direct printing from C++ inside R can cause problems (and is caught by R CMD check). Also removed <iostream.
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