The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
This vignette explains what each patient-mode output dataframe stores
in the bundled lc500 study.
For each dataframe:
head(...) output.CohortContrast::loadCohortContrastStudy() returns a
CohortContrastObject with these key components:
data_initialdata_persondata_featuresdata_patientscomplementaryMappingTableselectedFeatureDataconceptsDataconfig#> [1] "data_patients" "data_initial"
#> [3] "data_person" "data_features"
#> [5] "conceptsData" "complementaryMappingTable"
#> [7] "selectedFeatureData" "trajectoryDataList"
#> [9] "config"
data_initialOne row per cohort episode per subject.
Column descriptions:
COHORT_DEFINITION_ID: Cohort label (target
or control).SUBJECT_ID: Subject identifier.COHORT_START_DATE: Start date of follow-up for that
cohort episode.COHORT_END_DATE: End date of follow-up for that cohort
episode.#> COHORT_DEFINITION_ID SUBJECT_ID COHORT_START_DATE COHORT_END_DATE
#> 1 target 100001 2019-06-14 2020-06-13
#> 2 target 100002 2020-10-05 2021-10-05
#> 3 target 100003 2020-04-09 2021-04-09
#> 4 target 100004 2019-03-24 2020-03-23
#> 5 target 100005 2020-03-28 2021-03-28
#> 6 target 100006 2020-11-15 2021-11-15
#> 7 target 100007 2019-07-30 2020-07-29
#> 8 target 100008 2019-07-22 2020-07-21
#> 9 target 100009 2019-07-19 2020-07-18
#> 10 target 100010 2020-07-11 2021-07-11
data_personOne row per person with demographics.
Column descriptions:
PERSON_ID: Person identifier.GENDER_CONCEPT_ID: OMOP concept id for gender.YEAR_OF_BIRTH: Year of birth.#> PERSON_ID GENDER_CONCEPT_ID YEAR_OF_BIRTH
#> 1 100001 8507 1958
#> 2 100002 8507 1967
#> 3 100003 8507 1967
#> 4 100004 8507 1962
#> 5 100005 8532 1955
#> 6 100006 8507 1963
#> 7 100007 8507 1957
#> 8 100008 8507 1968
#> 9 100009 8532 1955
#> 10 100010 8507 1971
data_featuresOne row per concept (per abstraction level) with enrichment statistics.
Column descriptions:
CONCEPT_ID: Concept identifier.CONCEPT_NAME: Concept name.ABSTRACTION_LEVEL: Concept abstraction level
(-1 is base/import level).TARGET_SUBJECT_COUNT: Number of target subjects with
concept present.CONTROL_SUBJECT_COUNT: Number of control subjects with
concept present.TIME_TO_EVENT: List of pooled event times (days from
cohort start) for the concept.TARGET_SUBJECT_PREVALENCE: Target prevalence
proportion.CONTROL_SUBJECT_PREVALENCE: Control prevalence
proportion.PREVALENCE_DIFFERENCE_RATIO: Target/control prevalence
ratio.CHI2Y: Significant in chi-squared (Yates-corrected)
test.CHI2Y_P_VALUE: P-value from chi-squared test.LOGITTEST: Significant in logistic regression
test.LOGITTEST_P_VALUE: P-value from logistic regression
test.HERITAGE: Domain/heritage (for example
condition_occurrence, death,
visit_detail).#> CONCEPT_ID CONCEPT_NAME ABSTRACTION_LEVEL TARGET_SUBJECT_COUNT
#> 1 443388 Malignant tumor of lung -1 483
#> 2 32280 Death -1 156
#> 3 32815 Death Certificate -1 147
#> 4 4182985 Diffusion capacity of lung -1 371
#> 5 4306655 Death -1 150
#> 6 4014023 Palliative care -1 147
#> 7 4032404 Bronchoscopy -1 462
#> 8 4008226 Chemotherapy -1 164
#> 9 2107967 Lobectomy -1 165
#> 10 2107968 Lobectomy of lung -1 168
#> CONTROL_SUBJECT_COUNT
#> 1 6
#> 2 0
#> 3 0
#> 4 50
#> 5 2
#> 6 1
#> 7 10
#> 8 2
#> 9 1
#> 10 3
#> TIME_TO_EVENT
#> 1 4, 1, 4, 2, 6, 0, 6, 5, 5, 3, 5, 5, 8, 7, 6, 8, 4, 0, 10, 2, 7, 0, 7, 5, 2, 1, 9, 3, 4, 3, 3, 14, 2, 6, 2, 3, 6, 0, 8, 10, 5, 14, 0, 6, 5, 11, 6, 7, 6, 8, 4, 7, 0, 5, 7, 9, 8, 9, 0, 6, 8, 6, 4, 3, 16, 11, 4, 4, 5, 11, 3, 6, 6, 5, 8, 0, 2, 1, 4, 4, 5, 3, 5, 9, 10, 4, 6, 6, 10, 3, 4, 0, 5, 4, 0, 8, 5, 9, 5, 14, 0, 0, 4, 10, 5, 4, 13, 3, 1, 5, 2, 3, 0, 4, 11, 7, 0, 0, 13, 6, 4, 8, 6, 8, 9, 5, 0, 2, 4, 3, 13, 1, 5, 7, 3, 9, 5, 0, 3, 10, 3, 7, 8, 8, 6, 1, 3, 10, 8, 8, 4, 0, 15, 9, 0, 5, 4, 11, 7, 8, 6, 4, 1, 12, 0, 1, 3, 1, 12, 0, 6, 5, 11, 2, 0, 6, 2, 0, 6, 5, 6, 2, 11, 9, 1, 8, 3, 3, 5, 12, 3, 1, 6, 10, 8, 10, 4, 8, 3, 9, 11, 5, 3, 7, 7, 8, 2, 5, 10, 7, 4, 1, 5, 9, 6, 4, 2, 2, 13, 9, 16, 1, 2, 7, 3, 4, 3, 10, 2, 6, 7, 7, 6, 6, 3, 6, 4, 0, 6, 5, 10, 2, 9, 7, 3, 0, 6, 4, 10, 2, 5, 8, 1, 0, 2, 6, 5, 6, 3, 9, 5, 10, 11, 6, 6, 8, 0, 1, 8, 0, 0, 1, 1, 0, 2, 3, 5, 1, 4, 5, 6, 6, 9, 5, 1, 0, 0, 5, 11, 0, 7, 4, 2, 0, 5, 5, 11, 0, 3, 3, 2, 5, 7, 5, 7, 1, 6, 5, 3, 4, 6, 1, 10, 1, 4, 7, 3, 16, 4, 5, 0, 5, 5, 6, 3, 2, 8, 7, 3, 3, 0, 7, 10, 8, 3, 0, 7, 5, 8, 3, 3, 6, 5, 4, 6, 12, 6, 5, 3, 11, 7, 9, 14, 4, 0, 10, 1, 6, 11, 10, 2, 6, 2, 0, 7, 2, 0, 2, 1, 1, 5, 2, 3, 2, 7, 4, 6, 0, 7, 4, 10, 8, 5, 6, 1, 0, 18, 2, 2, 0, 2, 1, 10, 2, 9, 2, 4, 5, 5, 0, 0, 4, 4, 2, 13, 4, 13, 5, 6, 8, 3, 4, 7, 7, 1, 11, 13, 10, 3, 6, 1, 8, 2, 7, 8, 1, 3, 5, 4, 10, 2, 6, 0, 4, 2, 8, 1, 7, 0, 3, 6, 0, 10, 1, 8, 3, 7, 4, 1, 4, 4, 9, 1, 5, 3, 7, 9, 7, 6, 2, 7, 11, 3, 0, 7, 10, 1, 4, 13, 0, 9, 4, 2, 5, 4, 7, 13, 0, 0, 11, 2, 0, 2
#> 2 11, 244, 150, 165, 204, 148, 224, 191, 199, 214, 170, 212, 213, 200, 206, 190, 259, 192, 193, 232, 187, 191, 219, 180, 193, 157, 178, 158, 175, 175, 214, 183, 189, 201, 202, 194, 185, 166, 180, 212, 171, 171, 198, 193, 214, 224, 170, 168, 145, 187, 171, 213, 224, 203, 171, 209, 212, 195, 205, 270, 216, 213, 215, 183, 167, 178, 192, 152, 219, 177, 175, 190, 192, 193, 193, 173, 185, 250, 177, 160, 183, 173, 204, 174, 194, 189, 192, 186, 264, 181, 123, 176, 193, 260, 208, 226, 224, 211, 202, 243, 214, 187, 201, 217, 206, 164, 272, 189, 224, 167, 208, 216, 156, 151, 156, 199, 205, 175, 192, 170, 169, 224, 126, 176, 190, 187, 196, 173, 175, 209, 174, 150, 198, 232, 196, 178, 172, 219, 199, 243, 235, 190, 187, 217, 230, 173, 185, 212, 216, 203, 223, 211, 192, 168, 206, 200
#> 3 19, 90, 27, 220, 225, 267, 272, 244, 262, 299, 258, 245, 250, 247, 235, 237, 257, 207, 235, 224, 253, 254, 225, 248, 251, 235, 261, 253, 245, 230, 276, 230, 240, 237, 255, 256, 245, 260, 200, 224, 241, 240, 280, 113, 240, 192, 220, 227, 279, 255, 253, 242, 258, 234, 249, 198, 235, 263, 234, 259, 247, 260, 265, 226, 258, 214, 247, 273, 276, 248, 229, 227, 258, 235, 262, 253, 249, 279, 220, 248, 213, 292, 267, 247, 229, 249, 257, 255, 230, 231, 262, 226, 233, 268, 252, 244, 264, 211, 263, 249, 231, 243, 254, 267, 232, 250, 242, 271, 257, 217, 266, 251, 213, 256, 243, 286, 256, 281, 249, 264, 262, 226, 248, 262, 243, 254, 281, 235, 223, 276, 230, 293, 261, 245, 222, 220, 255, 237, 233, 268, 244, 265, 269, 235, 251, 255, 253
#> 4 11, 18, 23, 23, 2, 13, 19, 48, 23, 21, 0, 28, 14, 17, 0, 42, 9, 18, 0, 28, 13, 0, 6, 27, 12, 16, 24, 21, 34, 29, 16, 28, 25, 18, 18, 20, 20, 21, 27, 30, 23, 17, 1, 30, 13, 9, 13, 16, 15, 23, 6, 40, 21, 24, 22, 10, 12, 37, 2, 18, 27, 15, 24, 26, 7, 10, 19, 19, 16, 26, 0, 7, 10, 12, 24, 9, 11, 13, 20, 24, 0, 33, 7, 2, 0, 32, 2, 8, 24, 14, 34, 14, 33, 4, 3, 22, 25, 9, 30, 40, 35, 20, 6, 11, 36, 18, 33, 22, 2, 14, 15, 24, 16, 24, 0, 16, 11, 7, 7, 27, 9, 11, 28, 20, 15, 22, 17, 8, 33, 18, 15, 3, 11, 9, 28, 13, 25, 29, 9, 20, 28, 18, 2, 7, 15, 19, 29, 22, 25, 8, 34, 15, 7, 23, 23, 23, 9, 20, 21, 23, 7, 14, 28, 14, 26, 16, 32, 19, 0, 18, 30, 1, 7, 26, 28, 2, 33, 24, 23, 0, 6, 34, 8, 29, 18, 26, 6, 21, 17, 12, 11, 39, 12, 9, 17, 10, 37, 28, 24, 28, 32, 9, 26, 13, 18, 15, 28, 18, 29, 15, 40, 22, 3, 12, 37, 32, 7, 0, 20, 10, 38, 0, 29, 25, 9, 29, 27, 25, 34, 31, 31, 26, 22, 1, 14, 15, 16, 13, 18, 21, 0, 13, 9, 23, 15, 27, 19, 28, 5, 14, 5, 37, 8, 36, 16, 0, 26, 31, 43, 33, 20, 0, 52, 30, 32, 25, 0, 13, 10, 23, 1, 40, 5, 20, 18, 12, 14, 18, 17, 18, 28, 16, 32, 24, 3, 15, 22, 23, 20, 16, 0, 23, 24, 2, 31, 56, 23, 24, 7, 18, 18, 0, 38, 0, 11, 21, 9, 25, 28, 42, 18, 3, 23, 25, 32, 4, 23, 22, 30, 20, 11, 21, 0, 9, 27, 16, 5, 39, 26, 21, 38, 16, 11, 48, 16, 16, 22, 45, 19, 11, 29, 0, 22, 23, 19, 31, 12, 18, 25, 19, 31, 24, 34, 21, 27, 19, 29, 35, 33, 19, 30, 12, 13, 11, 24, 33, 33, 29, 13, 29, 29
#> 5 69, 53, 100, 89, 225, 216, 206, 192, 182, 171, 172, 208, 116, 177, 165, 217, 168, 221, 192, 199, 213, 189, 262, 178, 175, 208, 191, 189, 163, 132, 212, 226, 201, 232, 161, 187, 174, 139, 195, 181, 157, 152, 240, 177, 156, 210, 187, 213, 144, 212, 198, 177, 191, 212, 187, 189, 199, 218, 144, 226, 140, 139, 206, 167, 214, 224, 194, 221, 196, 223, 209, 224, 192, 195, 228, 170, 228, 205, 178, 217, 172, 199, 191, 212, 227, 209, 195, 209, 201, 214, 171, 232, 177, 181, 193, 163, 203, 177, 209, 177, 237, 164, 198, 167, 255, 213, 171, 244, 197, 236, 171, 206, 220, 217, 181, 201, 176, 193, 228, 170, 148, 197, 217, 180, 188, 200, 167, 234, 181, 234, 230, 189, 255, 151, 193, 154, 209, 244, 209, 203, 194, 230, 159, 281, 170, 300, 206, 200, 158, 182
#> 6 121, 39, 63, 209, 224, 283, 221, 201, 165, 180, 192, 226, 232, 217, 183, 152, 229, 166, 233, 226, 216, 234, 215, 250, 202, 266, 223, 261, 175, 268, 183, 184, 244, 186, 242, 235, 199, 227, 159, 226, 265, 234, 217, 214, 276, 241, 203, 209, 197, 202, 257, 164, 267, 300, 136, 186, 168, 173, 250, 237, 201, 166, 269, 217, 228, 202, 198, 212, 228, 224, 166, 180, 187, 199, 220, 185, 229, 236, 206, 220, 168, 204, 222, 187, 209, 165, 204, 242, 190, 162, 250, 227, 190, 210, 248, 176, 209, 262, 193, 170, 243, 162, 75, 227, 219, 190, 207, 195, 193, 189, 220, 217, 222, 219, 219, 194, 226, 224, 190, 213, 193, 169, 195, 216, 189, 206, 226, 194, 176, 192, 199, 234, 252, 217, 173, 214, 255, 171, 263, 251, 203, 172, 208, 196, 161, 214, 226
#> 7 0, 3, 5, 7, 7, 16, 7, 29, 0, 7, 10, 5, 4, 2, 8, 12, 4, 16, 12, 17, 10, 16, 0, 7, 14, 8, 12, 11, 18, 10, 3, 2, 13, 15, 6, 21, 10, 23, 15, 13, 5, 14, 20, 10, 10, 10, 5, 0, 11, 2, 9, 0, 8, 11, 11, 25, 8, 3, 0, 0, 4, 0, 16, 16, 0, 21, 21, 12, 0, 16, 1, 11, 12, 17, 8, 16, 7, 13, 9, 12, 4, 19, 3, 16, 17, 7, 15, 8, 10, 13, 12, 12, 16, 12, 9, 6, 9, 17, 7, 19, 11, 17, 7, 11, 10, 18, 10, 9, 0, 19, 8, 6, 18, 0, 11, 9, 3, 8, 31, 0, 0, 17, 16, 0, 9, 4, 12, 20, 0, 1, 6, 9, 13, 12, 0, 11, 17, 2, 14, 0, 7, 16, 19, 6, 7, 4, 1, 16, 10, 2, 25, 0, 3, 1, 11, 14, 0, 13, 11, 9, 14, 9, 10, 5, 0, 18, 18, 8, 31, 7, 11, 10, 8, 13, 10, 1, 0, 0, 14, 17, 16, 8, 8, 10, 0, 4, 17, 5, 19, 9, 11, 5, 2, 11, 22, 16, 15, 11, 5, 10, 7, 0, 13, 4, 15, 0, 8, 24, 12, 7, 15, 0, 7, 13, 17, 0, 18, 20, 2, 13, 14, 14, 5, 8, 0, 4, 12, 13, 12, 0, 10, 4, 15, 17, 19, 14, 10, 2, 0, 9, 1, 10, 9, 15, 11, 24, 5, 0, 16, 10, 13, 3, 0, 9, 22, 12, 10, 2, 22, 6, 5, 9, 16, 13, 3, 6, 12, 20, 9, 16, 11, 0, 8, 30, 11, 30, 15, 6, 7, 13, 12, 19, 27, 7, 0, 11, 10, 11, 7, 5, 7, 28, 0, 9, 13, 18, 11, 16, 6, 28, 24, 14, 4, 16, 9, 9, 18, 11, 0, 11, 7, 13, 23, 13, 8, 4, 0, 0, 10, 4, 5, 13, 5, 6, 21, 0, 12, 9, 17, 12, 11, 13, 15, 7, 3, 14, 25, 2, 23, 9, 14, 18, 15, 17, 9, 6, 7, 0, 18, 17, 6, 9, 24, 10, 3, 14, 10, 6, 0, 10, 14, 8, 12, 16, 16, 0, 16, 6, 22, 5, 7, 7, 3, 18, 4, 18, 11, 7, 4, 12, 10, 15, 5, 11, 22, 1, 25, 3, 8, 17, 8, 23, 9, 11, 15, 9, 22, 14, 16, 11, 27, 19, 13, 4, 9, 13, 6, 8, 9, 21, 3, 16, 11, 23, 7, 12, 21, 7, 23, 6, 13, 14, 18, 11, 1, 9, 11, 7, 11, 7, 10, 20, 5, 8, 5, 7, 14, 14, 7, 11, 13, 7, 5, 2, 0, 15, 5, 9, 9, 9, 8, 11, 8, 5, 4, 23, 10, 0, 6, 1, 3, 8
#> 8 24, 27, 6, 32, 20, 17, 18, 11, 0, 21, 25, 19, 26, 10, 9, 22, 13, 10, 13, 0, 20, 0, 29, 29, 0, 16, 24, 26, 16, 18, 18, 18, 21, 16, 20, 25, 18, 23, 17, 21, 22, 14, 21, 16, 33, 25, 12, 12, 15, 29, 28, 23, 13, 24, 27, 16, 22, 23, 29, 28, 25, 23, 21, 8, 16, 30, 13, 11, 20, 22, 24, 9, 0, 18, 18, 28, 7, 5, 16, 16, 5, 12, 25, 27, 15, 17, 0, 16, 26, 36, 13, 26, 23, 22, 16, 25, 6, 25, 13, 8, 23, 23, 14, 26, 0, 2, 30, 25, 0, 15, 48, 6, 16, 41, 0, 11, 18, 29, 16, 20, 28, 20, 11, 31, 3, 18, 22, 7, 12, 21, 32, 10, 6, 22, 27, 16, 18, 21, 29, 13, 42, 3, 25, 9, 22, 15, 27, 28, 0, 12, 11, 21, 17, 20, 36, 13, 29, 23, 11, 21, 21, 15, 151, 28
#> 9 113, 80, 120, 22, 22, 31, 19, 20, 22, 19, 20, 14, 17, 27, 6, 33, 6, 30, 28, 34, 11, 25, 0, 14, 11, 27, 18, 29, 17, 8, 24, 26, 14, 33, 21, 18, 27, 17, 14, 14, 15, 9, 13, 17, 26, 28, 26, 24, 18, 12, 14, 23, 12, 17, 18, 14, 17, 18, 19, 25, 22, 21, 17, 23, 20, 17, 16, 36, 30, 27, 17, 38, 16, 15, 25, 27, 22, 7, 23, 24, 17, 10, 30, 11, 25, 8, 23, 16, 19, 29, 22, 19, 20, 18, 32, 12, 26, 21, 6, 16, 18, 15, 23, 20, 18, 28, 20, 25, 35, 30, 13, 23, 30, 15, 26, 12, 12, 14, 25, 20, 16, 25, 12, 1, 16, 11, 26, 36, 22, 26, 21, 19, 18, 19, 21, 21, 18, 23, 12, 18, 1, 6, 17, 29, 17, 27, 21, 10, 26, 16, 24, 15, 26, 18, 32, 15, 29, 13, 16, 23, 92, 28, 30, 35, 75
#> 10 104, 65, 47, 121, 8, 25, 11, 19, 12, 28, 11, 24, 21, 14, 15, 16, 6, 44, 31, 28, 10, 20, 13, 16, 7, 16, 15, 12, 14, 20, 8, 18, 22, 23, 25, 13, 24, 15, 16, 11, 19, 5, 25, 33, 12, 11, 82, 20, 15, 20, 20, 29, 9, 14, 26, 18, 13, 11, 25, 24, 13, 16, 25, 14, 24, 16, 26, 17, 30, 8, 18, 2, 4, 19, 23, 15, 8, 26, 18, 31, 24, 11, 18, 0, 22, 17, 19, 21, 17, 20, 16, 23, 29, 30, 17, 21, 15, 19, 17, 32, 19, 17, 13, 13, 16, 38, 12, 9, 15, 10, 17, 22, 32, 28, 26, 24, 27, 13, 22, 16, 8, 10, 19, 18, 17, 22, 20, 15, 29, 13, 21, 16, 16, 7, 26, 24, 27, 7, 11, 24, 16, 14, 23, 16, 21, 13, 15, 11, 25, 9, 29, 22, 13, 23, 12, 18, 22, 24, 22, 28, 6, 13, 3, 25, 46, 59, 116, 19
#> TARGET_SUBJECT_PREVALENCE CONTROL_SUBJECT_PREVALENCE
#> 1 0.966 0.012
#> 2 0.312 0.000
#> 3 0.294 0.000
#> 4 0.742 0.100
#> 5 0.300 0.004
#> 6 0.294 0.002
#> 7 0.924 0.020
#> 8 0.328 0.004
#> 9 0.330 0.002
#> 10 0.336 0.006
#> PREVALENCE_DIFFERENCE_RATIO CHI2Y CHI2Y_P_VALUE LOGITTEST LOGITTEST_P_VALUE
#> 1 80.50 TRUE 0.001 TRUE 0.002
#> 2 100.00 TRUE 0.001 TRUE 0.002
#> 3 100.00 TRUE 0.001 TRUE 0.002
#> 4 7.42 TRUE 0.001 TRUE 0.002
#> 5 75.00 TRUE 0.001 TRUE 0.002
#> 6 147.00 TRUE 0.001 TRUE 0.002
#> 7 46.20 TRUE 0.001 TRUE 0.002
#> 8 82.00 TRUE 0.001 TRUE 0.002
#> 9 165.00 TRUE 0.001 TRUE 0.002
#> 10 56.00 TRUE 0.001 TRUE 0.002
#> HERITAGE
#> 1 condition_occurrence
#> 2 death
#> 3 death
#> 4 measurement
#> 5 observation
#> 6 observation
#> 7 procedure_occurrence
#> 8 procedure_occurrence
#> 9 procedure_occurrence
#> 10 procedure_occurrence
data_patientsOne row per patient-concept record.
Column descriptions:
COHORT_DEFINITION_ID: Cohort label for the patient
(target/control).PERSON_ID: Patient identifier.CONCEPT_ID: Concept identifier.CONCEPT_NAME: Concept name.HERITAGE: Concept domain.ABSTRACTION_LEVEL: Abstraction level.PREVALENCE: Number of occurrences for this
patient-concept.TIME_TO_EVENT: List of event times (days from cohort
start) for this patient-concept.#> COHORT_DEFINITION_ID PERSON_ID CONCEPT_ID
#> 1 target 100001 443388
#> 2 target 100001 9201
#> 3 target 100001 9202
#> 4 target 100001 4008211
#> 5 target 100001 4008226
#> 6 target 100001 4176729
#> 7 target 100001 4032404
#> 8 target 100001 4167262
#> 9 target 100002 443388
#> 10 target 100002 4182985
#> CONCEPT_NAME HERITAGE
#> 1 Malignant tumor of lung condition_occurrence
#> 2 Inpatient Visit visit_detail
#> 3 Outpatient Visit visit_detail
#> 4 Radiotherapy procedure_occurrence
#> 5 Chemotherapy procedure_occurrence
#> 6 Treatment planning for external beam radiation therapy procedure_occurrence
#> 7 Bronchoscopy procedure_occurrence
#> 8 Needle biopsy of lung procedure_occurrence
#> 9 Malignant tumor of lung condition_occurrence
#> 10 Diffusion capacity of lung measurement
#> ABSTRACTION_LEVEL PREVALENCE TIME_TO_EVENT
#> 1 -1 1 4
#> 2 -1 2 32, 52
#> 3 -1 3 34, 36, 64
#> 4 -1 3 22, 25, 42
#> 5 -1 4 24, 31, 33, 39
#> 6 -1 1 34
#> 7 -1 2 0, 15
#> 8 -1 2 2, 18
#> 9 -1 2 1, 6
#> 10 -1 2 11, 23
complementaryMappingTableMapping history table for concept merges.
Column descriptions:
CONCEPT_ID: Original concept id.CONCEPT_NAME: Original concept name.NEW_CONCEPT_ID: Mapped concept id.NEW_CONCEPT_NAME: Mapped concept name.TYPE: Mapping type (custom,
hierarchy, correlation, etc.).HERITAGE: Mapping heritage/domain.#> [1] CONCEPT_ID CONCEPT_NAME NEW_CONCEPT_ID NEW_CONCEPT_NAME
#> [5] TYPE HERITAGE
#> <0 rows> (or 0-length row.names)
selectedFeatureDataselectedFeatureData stores the selected concept subset
used by downstream analyses.
List elements:
selectedFeatureNames: Character vector of selected
concept names.selectedFeatureIds: Numeric vector of selected concept
ids.selectedFeatures: Dataframe with one row per selected
concept.selectedFeatureData$selectedFeatureNames preview#> CONCEPT_NAME
#> 1 Bronchoscopy
#> 2 Chemotherapy
#> 3 Death
#> 4 Death Certificate
#> 5 Diffusion capacity of lung
#> 6 Inpatient Visit
#> 7 Lobectomy
#> 8 Lobectomy of lung
#> 9 Malignant tumor of lung
#> 10 Needle biopsy of lung
selectedFeatureData$selectedFeatureIds preview#> CONCEPT_ID
#> 1 443388
#> 2 32280
#> 3 32815
#> 4 4182985
#> 5 4306655
#> 6 4014023
#> 7 4032404
#> 8 4008226
#> 9 2107967
#> 10 2107968
selectedFeatureData$selectedFeaturesselectedFeatures has the same schema as
data_features, but only for selected concepts.
Column descriptions:
CONCEPT_ID: Concept identifier.CONCEPT_NAME: Concept name.ABSTRACTION_LEVEL: Abstraction level.TARGET_SUBJECT_COUNT: Number of target subjects with
concept present.CONTROL_SUBJECT_COUNT: Number of control subjects with
concept present.TIME_TO_EVENT: List of pooled concept time-to-event
values.TARGET_SUBJECT_PREVALENCE: Target prevalence
proportion.CONTROL_SUBJECT_PREVALENCE: Control prevalence
proportion.PREVALENCE_DIFFERENCE_RATIO: Target/control prevalence
ratio.CHI2Y: Chi-squared significance flag.CHI2Y_P_VALUE: Chi-squared p-value.LOGITTEST: Logistic regression significance flag.LOGITTEST_P_VALUE: Logistic regression p-value.HERITAGE: Concept heritage/domain.#> CONCEPT_ID CONCEPT_NAME ABSTRACTION_LEVEL TARGET_SUBJECT_COUNT
#> 1 443388 Malignant tumor of lung -1 483
#> 2 32280 Death -1 156
#> 3 32815 Death Certificate -1 147
#> 4 4182985 Diffusion capacity of lung -1 371
#> 5 4306655 Death -1 150
#> 6 4014023 Palliative care -1 147
#> 7 4032404 Bronchoscopy -1 462
#> 8 4008226 Chemotherapy -1 164
#> 9 2107967 Lobectomy -1 165
#> 10 2107968 Lobectomy of lung -1 168
#> CONTROL_SUBJECT_COUNT
#> 1 6
#> 2 0
#> 3 0
#> 4 50
#> 5 2
#> 6 1
#> 7 10
#> 8 2
#> 9 1
#> 10 3
#> TIME_TO_EVENT
#> 1 4, 1, 4, 2, 6, 0, 6, 5, 5, 3, 5, 5, 8, 7, 6, 8, 4, 0, 10, 2, 7, 0, 7, 5, 2, 1, 9, 3, 4, 3, 3, 14, 2, 6, 2, 3, 6, 0, 8, 10, 5, 14, 0, 6, 5, 11, 6, 7, 6, 8, 4, 7, 0, 5, 7, 9, 8, 9, 0, 6, 8, 6, 4, 3, 16, 11, 4, 4, 5, 11, 3, 6, 6, 5, 8, 0, 2, 1, 4, 4, 5, 3, 5, 9, 10, 4, 6, 6, 10, 3, 4, 0, 5, 4, 0, 8, 5, 9, 5, 14, 0, 0, 4, 10, 5, 4, 13, 3, 1, 5, 2, 3, 0, 4, 11, 7, 0, 0, 13, 6, 4, 8, 6, 8, 9, 5, 0, 2, 4, 3, 13, 1, 5, 7, 3, 9, 5, 0, 3, 10, 3, 7, 8, 8, 6, 1, 3, 10, 8, 8, 4, 0, 15, 9, 0, 5, 4, 11, 7, 8, 6, 4, 1, 12, 0, 1, 3, 1, 12, 0, 6, 5, 11, 2, 0, 6, 2, 0, 6, 5, 6, 2, 11, 9, 1, 8, 3, 3, 5, 12, 3, 1, 6, 10, 8, 10, 4, 8, 3, 9, 11, 5, 3, 7, 7, 8, 2, 5, 10, 7, 4, 1, 5, 9, 6, 4, 2, 2, 13, 9, 16, 1, 2, 7, 3, 4, 3, 10, 2, 6, 7, 7, 6, 6, 3, 6, 4, 0, 6, 5, 10, 2, 9, 7, 3, 0, 6, 4, 10, 2, 5, 8, 1, 0, 2, 6, 5, 6, 3, 9, 5, 10, 11, 6, 6, 8, 0, 1, 8, 0, 0, 1, 1, 0, 2, 3, 5, 1, 4, 5, 6, 6, 9, 5, 1, 0, 0, 5, 11, 0, 7, 4, 2, 0, 5, 5, 11, 0, 3, 3, 2, 5, 7, 5, 7, 1, 6, 5, 3, 4, 6, 1, 10, 1, 4, 7, 3, 16, 4, 5, 0, 5, 5, 6, 3, 2, 8, 7, 3, 3, 0, 7, 10, 8, 3, 0, 7, 5, 8, 3, 3, 6, 5, 4, 6, 12, 6, 5, 3, 11, 7, 9, 14, 4, 0, 10, 1, 6, 11, 10, 2, 6, 2, 0, 7, 2, 0, 2, 1, 1, 5, 2, 3, 2, 7, 4, 6, 0, 7, 4, 10, 8, 5, 6, 1, 0, 18, 2, 2, 0, 2, 1, 10, 2, 9, 2, 4, 5, 5, 0, 0, 4, 4, 2, 13, 4, 13, 5, 6, 8, 3, 4, 7, 7, 1, 11, 13, 10, 3, 6, 1, 8, 2, 7, 8, 1, 3, 5, 4, 10, 2, 6, 0, 4, 2, 8, 1, 7, 0, 3, 6, 0, 10, 1, 8, 3, 7, 4, 1, 4, 4, 9, 1, 5, 3, 7, 9, 7, 6, 2, 7, 11, 3, 0, 7, 10, 1, 4, 13, 0, 9, 4, 2, 5, 4, 7, 13, 0, 0, 11, 2, 0, 2
#> 2 11, 244, 150, 165, 204, 148, 224, 191, 199, 214, 170, 212, 213, 200, 206, 190, 259, 192, 193, 232, 187, 191, 219, 180, 193, 157, 178, 158, 175, 175, 214, 183, 189, 201, 202, 194, 185, 166, 180, 212, 171, 171, 198, 193, 214, 224, 170, 168, 145, 187, 171, 213, 224, 203, 171, 209, 212, 195, 205, 270, 216, 213, 215, 183, 167, 178, 192, 152, 219, 177, 175, 190, 192, 193, 193, 173, 185, 250, 177, 160, 183, 173, 204, 174, 194, 189, 192, 186, 264, 181, 123, 176, 193, 260, 208, 226, 224, 211, 202, 243, 214, 187, 201, 217, 206, 164, 272, 189, 224, 167, 208, 216, 156, 151, 156, 199, 205, 175, 192, 170, 169, 224, 126, 176, 190, 187, 196, 173, 175, 209, 174, 150, 198, 232, 196, 178, 172, 219, 199, 243, 235, 190, 187, 217, 230, 173, 185, 212, 216, 203, 223, 211, 192, 168, 206, 200
#> 3 19, 90, 27, 220, 225, 267, 272, 244, 262, 299, 258, 245, 250, 247, 235, 237, 257, 207, 235, 224, 253, 254, 225, 248, 251, 235, 261, 253, 245, 230, 276, 230, 240, 237, 255, 256, 245, 260, 200, 224, 241, 240, 280, 113, 240, 192, 220, 227, 279, 255, 253, 242, 258, 234, 249, 198, 235, 263, 234, 259, 247, 260, 265, 226, 258, 214, 247, 273, 276, 248, 229, 227, 258, 235, 262, 253, 249, 279, 220, 248, 213, 292, 267, 247, 229, 249, 257, 255, 230, 231, 262, 226, 233, 268, 252, 244, 264, 211, 263, 249, 231, 243, 254, 267, 232, 250, 242, 271, 257, 217, 266, 251, 213, 256, 243, 286, 256, 281, 249, 264, 262, 226, 248, 262, 243, 254, 281, 235, 223, 276, 230, 293, 261, 245, 222, 220, 255, 237, 233, 268, 244, 265, 269, 235, 251, 255, 253
#> 4 11, 18, 23, 23, 2, 13, 19, 48, 23, 21, 0, 28, 14, 17, 0, 42, 9, 18, 0, 28, 13, 0, 6, 27, 12, 16, 24, 21, 34, 29, 16, 28, 25, 18, 18, 20, 20, 21, 27, 30, 23, 17, 1, 30, 13, 9, 13, 16, 15, 23, 6, 40, 21, 24, 22, 10, 12, 37, 2, 18, 27, 15, 24, 26, 7, 10, 19, 19, 16, 26, 0, 7, 10, 12, 24, 9, 11, 13, 20, 24, 0, 33, 7, 2, 0, 32, 2, 8, 24, 14, 34, 14, 33, 4, 3, 22, 25, 9, 30, 40, 35, 20, 6, 11, 36, 18, 33, 22, 2, 14, 15, 24, 16, 24, 0, 16, 11, 7, 7, 27, 9, 11, 28, 20, 15, 22, 17, 8, 33, 18, 15, 3, 11, 9, 28, 13, 25, 29, 9, 20, 28, 18, 2, 7, 15, 19, 29, 22, 25, 8, 34, 15, 7, 23, 23, 23, 9, 20, 21, 23, 7, 14, 28, 14, 26, 16, 32, 19, 0, 18, 30, 1, 7, 26, 28, 2, 33, 24, 23, 0, 6, 34, 8, 29, 18, 26, 6, 21, 17, 12, 11, 39, 12, 9, 17, 10, 37, 28, 24, 28, 32, 9, 26, 13, 18, 15, 28, 18, 29, 15, 40, 22, 3, 12, 37, 32, 7, 0, 20, 10, 38, 0, 29, 25, 9, 29, 27, 25, 34, 31, 31, 26, 22, 1, 14, 15, 16, 13, 18, 21, 0, 13, 9, 23, 15, 27, 19, 28, 5, 14, 5, 37, 8, 36, 16, 0, 26, 31, 43, 33, 20, 0, 52, 30, 32, 25, 0, 13, 10, 23, 1, 40, 5, 20, 18, 12, 14, 18, 17, 18, 28, 16, 32, 24, 3, 15, 22, 23, 20, 16, 0, 23, 24, 2, 31, 56, 23, 24, 7, 18, 18, 0, 38, 0, 11, 21, 9, 25, 28, 42, 18, 3, 23, 25, 32, 4, 23, 22, 30, 20, 11, 21, 0, 9, 27, 16, 5, 39, 26, 21, 38, 16, 11, 48, 16, 16, 22, 45, 19, 11, 29, 0, 22, 23, 19, 31, 12, 18, 25, 19, 31, 24, 34, 21, 27, 19, 29, 35, 33, 19, 30, 12, 13, 11, 24, 33, 33, 29, 13, 29, 29
#> 5 69, 53, 100, 89, 225, 216, 206, 192, 182, 171, 172, 208, 116, 177, 165, 217, 168, 221, 192, 199, 213, 189, 262, 178, 175, 208, 191, 189, 163, 132, 212, 226, 201, 232, 161, 187, 174, 139, 195, 181, 157, 152, 240, 177, 156, 210, 187, 213, 144, 212, 198, 177, 191, 212, 187, 189, 199, 218, 144, 226, 140, 139, 206, 167, 214, 224, 194, 221, 196, 223, 209, 224, 192, 195, 228, 170, 228, 205, 178, 217, 172, 199, 191, 212, 227, 209, 195, 209, 201, 214, 171, 232, 177, 181, 193, 163, 203, 177, 209, 177, 237, 164, 198, 167, 255, 213, 171, 244, 197, 236, 171, 206, 220, 217, 181, 201, 176, 193, 228, 170, 148, 197, 217, 180, 188, 200, 167, 234, 181, 234, 230, 189, 255, 151, 193, 154, 209, 244, 209, 203, 194, 230, 159, 281, 170, 300, 206, 200, 158, 182
#> 6 121, 39, 63, 209, 224, 283, 221, 201, 165, 180, 192, 226, 232, 217, 183, 152, 229, 166, 233, 226, 216, 234, 215, 250, 202, 266, 223, 261, 175, 268, 183, 184, 244, 186, 242, 235, 199, 227, 159, 226, 265, 234, 217, 214, 276, 241, 203, 209, 197, 202, 257, 164, 267, 300, 136, 186, 168, 173, 250, 237, 201, 166, 269, 217, 228, 202, 198, 212, 228, 224, 166, 180, 187, 199, 220, 185, 229, 236, 206, 220, 168, 204, 222, 187, 209, 165, 204, 242, 190, 162, 250, 227, 190, 210, 248, 176, 209, 262, 193, 170, 243, 162, 75, 227, 219, 190, 207, 195, 193, 189, 220, 217, 222, 219, 219, 194, 226, 224, 190, 213, 193, 169, 195, 216, 189, 206, 226, 194, 176, 192, 199, 234, 252, 217, 173, 214, 255, 171, 263, 251, 203, 172, 208, 196, 161, 214, 226
#> 7 0, 3, 5, 7, 7, 16, 7, 29, 0, 7, 10, 5, 4, 2, 8, 12, 4, 16, 12, 17, 10, 16, 0, 7, 14, 8, 12, 11, 18, 10, 3, 2, 13, 15, 6, 21, 10, 23, 15, 13, 5, 14, 20, 10, 10, 10, 5, 0, 11, 2, 9, 0, 8, 11, 11, 25, 8, 3, 0, 0, 4, 0, 16, 16, 0, 21, 21, 12, 0, 16, 1, 11, 12, 17, 8, 16, 7, 13, 9, 12, 4, 19, 3, 16, 17, 7, 15, 8, 10, 13, 12, 12, 16, 12, 9, 6, 9, 17, 7, 19, 11, 17, 7, 11, 10, 18, 10, 9, 0, 19, 8, 6, 18, 0, 11, 9, 3, 8, 31, 0, 0, 17, 16, 0, 9, 4, 12, 20, 0, 1, 6, 9, 13, 12, 0, 11, 17, 2, 14, 0, 7, 16, 19, 6, 7, 4, 1, 16, 10, 2, 25, 0, 3, 1, 11, 14, 0, 13, 11, 9, 14, 9, 10, 5, 0, 18, 18, 8, 31, 7, 11, 10, 8, 13, 10, 1, 0, 0, 14, 17, 16, 8, 8, 10, 0, 4, 17, 5, 19, 9, 11, 5, 2, 11, 22, 16, 15, 11, 5, 10, 7, 0, 13, 4, 15, 0, 8, 24, 12, 7, 15, 0, 7, 13, 17, 0, 18, 20, 2, 13, 14, 14, 5, 8, 0, 4, 12, 13, 12, 0, 10, 4, 15, 17, 19, 14, 10, 2, 0, 9, 1, 10, 9, 15, 11, 24, 5, 0, 16, 10, 13, 3, 0, 9, 22, 12, 10, 2, 22, 6, 5, 9, 16, 13, 3, 6, 12, 20, 9, 16, 11, 0, 8, 30, 11, 30, 15, 6, 7, 13, 12, 19, 27, 7, 0, 11, 10, 11, 7, 5, 7, 28, 0, 9, 13, 18, 11, 16, 6, 28, 24, 14, 4, 16, 9, 9, 18, 11, 0, 11, 7, 13, 23, 13, 8, 4, 0, 0, 10, 4, 5, 13, 5, 6, 21, 0, 12, 9, 17, 12, 11, 13, 15, 7, 3, 14, 25, 2, 23, 9, 14, 18, 15, 17, 9, 6, 7, 0, 18, 17, 6, 9, 24, 10, 3, 14, 10, 6, 0, 10, 14, 8, 12, 16, 16, 0, 16, 6, 22, 5, 7, 7, 3, 18, 4, 18, 11, 7, 4, 12, 10, 15, 5, 11, 22, 1, 25, 3, 8, 17, 8, 23, 9, 11, 15, 9, 22, 14, 16, 11, 27, 19, 13, 4, 9, 13, 6, 8, 9, 21, 3, 16, 11, 23, 7, 12, 21, 7, 23, 6, 13, 14, 18, 11, 1, 9, 11, 7, 11, 7, 10, 20, 5, 8, 5, 7, 14, 14, 7, 11, 13, 7, 5, 2, 0, 15, 5, 9, 9, 9, 8, 11, 8, 5, 4, 23, 10, 0, 6, 1, 3, 8
#> 8 24, 27, 6, 32, 20, 17, 18, 11, 0, 21, 25, 19, 26, 10, 9, 22, 13, 10, 13, 0, 20, 0, 29, 29, 0, 16, 24, 26, 16, 18, 18, 18, 21, 16, 20, 25, 18, 23, 17, 21, 22, 14, 21, 16, 33, 25, 12, 12, 15, 29, 28, 23, 13, 24, 27, 16, 22, 23, 29, 28, 25, 23, 21, 8, 16, 30, 13, 11, 20, 22, 24, 9, 0, 18, 18, 28, 7, 5, 16, 16, 5, 12, 25, 27, 15, 17, 0, 16, 26, 36, 13, 26, 23, 22, 16, 25, 6, 25, 13, 8, 23, 23, 14, 26, 0, 2, 30, 25, 0, 15, 48, 6, 16, 41, 0, 11, 18, 29, 16, 20, 28, 20, 11, 31, 3, 18, 22, 7, 12, 21, 32, 10, 6, 22, 27, 16, 18, 21, 29, 13, 42, 3, 25, 9, 22, 15, 27, 28, 0, 12, 11, 21, 17, 20, 36, 13, 29, 23, 11, 21, 21, 15, 151, 28
#> 9 113, 80, 120, 22, 22, 31, 19, 20, 22, 19, 20, 14, 17, 27, 6, 33, 6, 30, 28, 34, 11, 25, 0, 14, 11, 27, 18, 29, 17, 8, 24, 26, 14, 33, 21, 18, 27, 17, 14, 14, 15, 9, 13, 17, 26, 28, 26, 24, 18, 12, 14, 23, 12, 17, 18, 14, 17, 18, 19, 25, 22, 21, 17, 23, 20, 17, 16, 36, 30, 27, 17, 38, 16, 15, 25, 27, 22, 7, 23, 24, 17, 10, 30, 11, 25, 8, 23, 16, 19, 29, 22, 19, 20, 18, 32, 12, 26, 21, 6, 16, 18, 15, 23, 20, 18, 28, 20, 25, 35, 30, 13, 23, 30, 15, 26, 12, 12, 14, 25, 20, 16, 25, 12, 1, 16, 11, 26, 36, 22, 26, 21, 19, 18, 19, 21, 21, 18, 23, 12, 18, 1, 6, 17, 29, 17, 27, 21, 10, 26, 16, 24, 15, 26, 18, 32, 15, 29, 13, 16, 23, 92, 28, 30, 35, 75
#> 10 104, 65, 47, 121, 8, 25, 11, 19, 12, 28, 11, 24, 21, 14, 15, 16, 6, 44, 31, 28, 10, 20, 13, 16, 7, 16, 15, 12, 14, 20, 8, 18, 22, 23, 25, 13, 24, 15, 16, 11, 19, 5, 25, 33, 12, 11, 82, 20, 15, 20, 20, 29, 9, 14, 26, 18, 13, 11, 25, 24, 13, 16, 25, 14, 24, 16, 26, 17, 30, 8, 18, 2, 4, 19, 23, 15, 8, 26, 18, 31, 24, 11, 18, 0, 22, 17, 19, 21, 17, 20, 16, 23, 29, 30, 17, 21, 15, 19, 17, 32, 19, 17, 13, 13, 16, 38, 12, 9, 15, 10, 17, 22, 32, 28, 26, 24, 27, 13, 22, 16, 8, 10, 19, 18, 17, 22, 20, 15, 29, 13, 21, 16, 16, 7, 26, 24, 27, 7, 11, 24, 16, 14, 23, 16, 21, 13, 15, 11, 25, 9, 29, 22, 13, 23, 12, 18, 22, 24, 22, 28, 6, 13, 3, 25, 46, 59, 116, 19
#> TARGET_SUBJECT_PREVALENCE CONTROL_SUBJECT_PREVALENCE
#> 1 0.966 0.012
#> 2 0.312 0.000
#> 3 0.294 0.000
#> 4 0.742 0.100
#> 5 0.300 0.004
#> 6 0.294 0.002
#> 7 0.924 0.020
#> 8 0.328 0.004
#> 9 0.330 0.002
#> 10 0.336 0.006
#> PREVALENCE_DIFFERENCE_RATIO CHI2Y CHI2Y_P_VALUE LOGITTEST LOGITTEST_P_VALUE
#> 1 80.50 TRUE 0.001 TRUE 0.002
#> 2 100.00 TRUE 0.001 TRUE 0.002
#> 3 100.00 TRUE 0.001 TRUE 0.002
#> 4 7.42 TRUE 0.001 TRUE 0.002
#> 5 75.00 TRUE 0.001 TRUE 0.002
#> 6 147.00 TRUE 0.001 TRUE 0.002
#> 7 46.20 TRUE 0.001 TRUE 0.002
#> 8 82.00 TRUE 0.001 TRUE 0.002
#> 9 165.00 TRUE 0.001 TRUE 0.002
#> 10 56.00 TRUE 0.001 TRUE 0.002
#> HERITAGE
#> 1 condition_occurrence
#> 2 death
#> 3 death
#> 4 measurement
#> 5 observation
#> 6 observation
#> 7 procedure_occurrence
#> 8 procedure_occurrence
#> 9 procedure_occurrence
#> 10 procedure_occurrence
conceptsDataconceptsData stores optional OMOP vocabulary context
tables.
conceptsData$concept_ancestorColumn descriptions:
ancestor_concept_id: Ancestor concept id in
hierarchy.descendant_concept_id: Descendant concept id in
hierarchy.min_levels_of_separation: Minimum hierarchy
distance.max_levels_of_separation: Maximum hierarchy
distance.#> ancestor_concept_id descendant_concept_id min_levels_of_separation
#> 1 4008211 4176729 1
#> 2 2107967 2107968 1
#> 3 2107967 2108158 1
#> 4 32280 32815 1
#> max_levels_of_separation
#> 1 1
#> 2 1
#> 3 1
#> 4 1
conceptsData$conceptTypical OMOP concept columns:
concept_id: Concept identifier.concept_name: Human-readable concept name.domain_id: Domain label.vocabulary_id: Vocabulary source.concept_class_id: Concept class.standard_concept: Standard concept flag.concept_code: Source code inside vocabulary.valid_start_date: Validity start date.valid_end_date: Validity end date.invalid_reason: Invalidation code (if concept is
retired).#> concept_id concept_name invalid_reason
#> 1 9201 Inpatient Visit <NA>
#> 2 9202 Outpatient Visit <NA>
#> 3 32280 Death <NA>
#> 4 32815 Death Certificate <NA>
#> 5 443388 Malignant tumor of lung <NA>
#> 6 2107967 Lobectomy <NA>
#> 7 2107968 Lobectomy of lung <NA>
#> 8 2108158 Partial pneumonectomy <NA>
#> 9 4008211 Radiotherapy <NA>
#> 10 4008226 Chemotherapy <NA>
configconfig stores study-level metadata loaded with the saved
study.
Top-level fields:
complName: Loaded study folder name.metadata: Sidecar metadata from
metadata.json.#> field value
#> 1 complName lc500
#> 2 has_metadata TRUE
config$metadata scalar fields preview#> field value
#> 1 study lc500
#> 2 target_patients 500
#> 3 control_patients 500
#> 4 chi2y_count 16
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.