To cite package 'Ckmeans.1d.dp' in publications use:

Wang H, Song M (2011). “Ckmeans.1d.dp: Optimal $k$-means clustering in one dimension by dynamic programming.” The R Journal, 3(2), 29–33. doi:10.32614/RJ-2011-015.

Song M, Zhong H (2020). “Efficient weighted univariate clustering maps outstanding dysregulated genomic zones in human cancers.” Bioinformatics, 36(20), 5027–5036. doi:10.1093/bioinformatics/btaa613.

To cite multi-channel weighted clustering in publications use:

Zhong H (2019). Model-free Gene-to-zone Network Inference of Molecular Mechanisms in Biology. Ph.D. thesis, Department of Computer Science, New Mexico State University, Las Cruces, NM, USA.

Corresponding BibTeX entries:

  @Article{Wang2011Ckmeans,
    title = {Ckmeans.1d.dp: Optimal $k$-means clustering in one
      dimension by dynamic programming},
    journal = {The R Journal},
    volume = {3},
    number = {2},
    pages = {29--33},
    year = {2011},
    author = {Haizhou Wang and Mingzhou Song},
    doi = {10.32614/RJ-2011-015},
  }

  @Article{song2020wuc,
    author = {Mingzhou Song and Hua Zhong},
    journal = {Bioinformatics},
    month = {Jul},
    title = {Efficient weighted univariate clustering maps outstanding
      dysregulated genomic zones in human cancers.},
    year = {2020},
    volume = {36},
    number = {20},
    pages = {5027--5036},
    doi = {10.1093/bioinformatics/btaa613},
  }

  @PhdThesis{zhong2019modelfree,
    author = {Hua Zhong},
    year = {2019},
    title = {Model-free Gene-to-zone Network Inference of Molecular
      Mechanisms in Biology},
    school = {Department of Computer Science, New Mexico State
      University},
    address = {Las Cruces, NM, USA},
  }