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CRABS: Congruent Rate Analysis in Birth-death Scenarios

DOI

A package for investigating and visualizing the congruence class (Louca & Pennell 2020) of a phylogenetic birth-death model. Previously, this package went by the acronym ACDC.

Installation:

The stable version can be installed from CRAN:

install.packages("CRABS")

The developmental version can be installed from the github repository. The package devtools makes this convenient:

install.packages("devtools")
library(devtools)
install_github("afmagee/CRABS")

Documentation

There is documentation for each function in R (type ?CRABS in the R-console), as well as a long-form vignette with an example workflow.

References

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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