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CBASSED50: Process CBASS-Derived PAM Data
Tools to process CBASS-derived PAM data efficiently. Minimal requirements are PAM-based photosynthetic efficiency data (or data from any other continuous variable that changes with temperature, e.g. relative bleaching scores) from 4 coral samples (nubbins) subjected to 4 temperature profiles of at least 2 colonies from 1 coral species from 1 site. Please refer to the following CBASS (Coral Bleaching Automated Stress System) papers for in-depth information regarding CBASS acute thermal stress assays, experimental design considerations, and ED5/ED50/ED95 thermal parameters: Nicolas R. Evensen et al. (2023) <doi:10.1002/lom3.10555> Christian R. Voolstra et al. (2020) <doi:10.1111/gcb.15148> Christian R. Voolstra et al. (2025) <doi:10.1146/annurev-marine-032223-024511>.
| Version: |
0.2.0 |
| Depends: |
R (≥ 3.5.0) |
| Imports: |
drc, rlog, stats, utils, dplyr, ggplot2, readxl, glue |
| Suggests: |
testthat (≥ 3.0.0) |
| Published: |
2025-06-06 |
| DOI: |
10.32614/CRAN.package.CBASSED50 |
| Author: |
Yulia Iakovleva 
[aut],
Luigi Colin [aut,
cre],
Christian Robert Voolstra
[aut] |
| Maintainer: |
Luigi Colin <reefgenomics at gmail.com> |
| License: |
MIT + file LICENSE |
| NeedsCompilation: |
no |
| CRAN checks: |
CBASSED50 results |
Documentation:
Downloads:
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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