The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
A first-principle, phylogeny-aware comparative genomics tool for investigating associations between terms used to annotate genomic components (e.g., Pfam IDs, Gene Ontology terms,) with quantitative or rank variables such as number of cell types, genome size, or density of specific genomic elements. See the project website for more information, documentation and examples, and <doi:10.1016/j.patter.2023.100728> for the full paper.
Version: | 1.0.16 |
Depends: | R (≥ 3.6.0) |
Imports: | assertthat (≥ 0.2.1), pbmcapply (≥ 1.5.0), ape (≥ 5.3.0), rmarkdown (≥ 2.1.0), nlme (≥ 3.1.0), BiocManager (≥ 1.30.10), taxize (≥ 0.9.92), dendextend (≥ 1.15.2), heatmaply (≥ 1.1.0), ggplot2 (≥ 2.3.2), plotly (≥ 4.9.2), DT (≥ 0.13), htmltools (≥ 0.5.0), htmlwidgets (≥ 1.5.1), pkgdown (≥ 1.5.1), knitr (≥ 1.28) |
Suggests: | AnnotationDbi, KEGGREST, GO.db |
Published: | 2023-04-26 |
DOI: | 10.32614/CRAN.package.CALANGO |
Author: | Francisco Lobo [aut], Felipe Campelo [aut, cre], Jorge Augusto Hongo [aut], Giovanni Marques de Castro [aut], Gabriel Almeida [sad, dnc] |
Maintainer: | Felipe Campelo <fcampelo at gmail.com> |
BugReports: | https://github.com/fcampelo/CALANGO/issues/ |
License: | GPL-2 |
URL: | https://labpackages.github.io/CALANGO/ |
NeedsCompilation: | no |
Language: | en-US |
Citation: | CALANGO citation info |
Materials: | README NEWS |
In views: | Phylogenetics |
CRAN checks: | CALANGO results |
Reference manual: | CALANGO.pdf |
Vignettes: |
CALANGO Parameters |
Package source: | CALANGO_1.0.16.tar.gz |
Windows binaries: | r-devel: CALANGO_1.0.16.zip, r-release: CALANGO_1.0.16.zip, r-oldrel: CALANGO_1.0.16.zip |
macOS binaries: | r-release (arm64): CALANGO_1.0.16.tgz, r-oldrel (arm64): CALANGO_1.0.16.tgz, r-release (x86_64): CALANGO_1.0.16.tgz, r-oldrel (x86_64): CALANGO_1.0.16.tgz |
Old sources: | CALANGO archive |
Please use the canonical form https://CRAN.R-project.org/package=CALANGO to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.