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BioUtils 0.0.1

Initial release

Features

• Load and parse GEO SOFT files (load.geo.soft)
• Extract expression, phenotype, and gene annotation data (extract.expression)
• Perform differential expression analysis using limma (run.limma.de)
• Visualize results with PCA and volcano plots
• Conduct single-gene statistical analysis (analyze.gene)
• Generate gene-level visualizations (gene.analysis.plot)
• Compute gene correlation matrices and heatmaps
• Perform Gene Set Enrichment Analysis (run.gsea)
• Fit LASSO models for multi-gene biomarker discovery (fit.lasso)

Documentation

• Added full pkgdown website
• Added case study vignette on renal cell carcinoma transcriptomics

BioUtils 0.1.1

Working release

Features

No features were changed

Documentation

• Added an additional vignette to show extensions upon the package particularly relating to visual analytics

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.