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BioTIMEr is an R package which gives you functions to work with BioTIME communities and provides an subset of the BioTIME database.
BioTIME (the Global database of assemblage time series for quantifying and understanding biodiversity change) is an international network and an open access database, free to anyone, anywhere in the world to use for education, research, and conservation.
install.packages("BioTIMEr") # CRAN version
::pkg_install("bioTIMEHub//BioTIMEr") # dev version pak
Most BioTIME users are interested in standardising the extent of the datasets. Here using the data subset included inside the package.
library(BioTIMEr)
gridding(BTsubset_meta, BTsubset_data)
A likely following step would be to rarefy communities to a common sampling effort.
gridding(BTsubset_meta, BTsubset_data) %>%
resampling("ABUNDANCE")
Under the terms of the BioTIME data user agreement, users who download data agree to cite a DOI.
Please also cite BioTIMEr by running
citation(package = "BioTIMEr")
.
BioTIMEr
in R doing
citation(package = 'BioTIMEr')
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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