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#> Last Update: 2026-01-06 13:42:46.059798Functions to aid the data analysis of bioassessment and biomonitoring data. Suite of functions and tools for metric calculation and scoring for mult-metric indices and related data manipulation.
To install from CRAN use the code below.
install.packages("BioMonTools")To install the most current version on GitHub use the code below. The
use of “force = TRUE” ensures the package is installed even if already
present. If the package remotes is missing the code below
will install it.
if(!require(remotes)){install.packages("remotes")} #install if needed
install_github("leppott/BioMonTools", force=TRUE)Vignettes are not installed by default. If you want the additional documentation (recommended) then use this version of the code.
if(!require(remotes)){install.packages("remotes")} #install if needed
install_github("leppott/BioMonTools", force=TRUE, build_vignettes=TRUE)If having issues with install (e.g., ‘cannot open URL’) it could be a latency issue with GitHub.
Use the code below before retrying the above install commands.
options(timeout=400)Stable and mature.
By those using involved with bioassessment and biomonitoring and the need for data manipulation.
A common set of tools will standardize outputs across entities. No longer need to use the same database or spreadsheet. Only need to format data for use with these tools.
Vignette and install guide updates are planned for the future.
Leppo, E.W., J. Stamp, and B. Block. 2025. BioMonTools: Tools for Biomonitoring and Bioassessment. R package version 1.2.4.9004. https://github.com/leppott/BioMonTools
https://github.com/leppott/BioMonTools/issues
Add as issues for tracking purposes. Will add metrics and indices as needed.
Updates to CRAN as have time.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.