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BioMark: Find Biomarkers in Two-Class Discrimination Problems

Variable selection methods are provided for several classification methods: the lasso/elastic net, PCLDA, PLSDA, and several t-tests. Two approaches for selecting cutoffs can be used, one based on the stability of model coefficients under perturbation, and the other on higher criticism.

Version: 0.4.5
Depends: pls, glmnet, MASS, st (≥ 1.1.6)
Published: 2015-09-07
DOI: 10.32614/CRAN.package.BioMark
Author: Ron Wehrens, Pietro Franceschi
Maintainer: Ron Wehrens <ron.wehrens at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
Citation: BioMark citation info
Materials: NEWS
In views: ChemPhys
CRAN checks: BioMark results

Documentation:

Reference manual: BioMark.pdf

Downloads:

Package source: BioMark_0.4.5.tar.gz
Windows binaries: r-devel: BioMark_0.4.5.zip, r-release: BioMark_0.4.5.zip, r-oldrel: BioMark_0.4.5.zip
macOS binaries: r-release (arm64): BioMark_0.4.5.tgz, r-oldrel (arm64): BioMark_0.4.5.tgz, r-release (x86_64): BioMark_0.4.5.tgz, r-oldrel (x86_64): BioMark_0.4.5.tgz
Old sources: BioMark archive

Reverse dependencies:

Reverse suggests: biosigner

Linking:

Please use the canonical form https://CRAN.R-project.org/package=BioMark to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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